Wall clock time and date at job start Mon Mar 30 2020 02:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99699 * 2 1 4 4 H 1.48496 * 109.47103 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47025 * 300.00147 * 3 2 1 6 6 H 1.48496 * 109.46923 * 59.99845 * 3 2 1 7 7 C 1.37878 * 120.00401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99848 * 175.08959 * 7 2 1 9 9 C 1.50696 * 119.99975 * 355.09398 * 7 2 1 10 10 C 1.53004 * 110.45644 * 65.14308 * 9 7 2 11 11 N 1.46900 * 109.47016 * 61.10259 * 10 9 7 12 12 C 1.54514 * 110.62733 * 302.45875 * 9 7 2 13 13 C 1.54473 * 104.06444 * 241.29827 * 12 9 7 14 14 O 1.44431 * 104.80285 * 336.02143 * 13 12 9 15 15 C 1.44431 * 105.27359 * 40.51143 * 14 13 12 16 16 H 0.97002 * 120.00305 * 0.02562 * 1 2 3 17 17 H 1.09005 * 109.46945 * 181.10059 * 10 9 7 18 18 H 1.08994 * 109.47370 * 301.09550 * 10 9 7 19 19 H 1.00902 * 110.99815 * 184.68588 * 11 10 9 20 20 H 1.00905 * 110.99496 * 308.63416 * 11 10 9 21 21 H 1.08997 * 110.51154 * 359.94358 * 12 9 7 22 22 H 1.09005 * 110.50646 * 122.65317 * 12 9 7 23 23 H 1.08992 * 110.37621 * 217.19054 * 13 12 9 24 24 H 1.09001 * 110.37615 * 94.84885 * 13 12 9 25 25 H 1.08996 * 110.37037 * 200.65365 * 15 14 13 26 26 H 1.08999 * 110.46718 * 78.36714 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0817 -1.1957 -0.0795 9 6 1.2554 -2.4967 0.1127 10 6 0.3722 -2.7133 -1.1178 11 7 1.2140 -2.7736 -2.3202 12 6 0.4042 -2.5258 1.4019 13 6 0.9752 -3.7174 2.2020 14 8 1.5836 -4.5712 1.2086 15 6 2.2400 -3.6742 0.2864 16 1 -0.4851 0.8400 -0.0004 17 1 -0.1764 -3.6492 -1.0110 18 1 -0.3329 -1.8872 -1.2089 19 1 0.6495 -2.8396 -3.1539 20 1 1.8358 -1.9802 -2.3664 21 1 0.5252 -1.5977 1.9605 22 1 -0.6458 -2.6945 1.1626 23 1 0.1743 -4.2467 2.7181 24 1 1.7239 -3.3719 2.9150 25 1 2.4106 -4.1703 -0.6690 26 1 3.1832 -3.3217 0.7038 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260414174.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:19 Heat of formation + Delta-G solvation = -74.309622 kcal Electronic energy + Delta-G solvation = -10577.795599 eV Core-core repulsion = 8655.154561 eV Total energy + Delta-G solvation = -1922.641038 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.26231 -36.28971 -33.90044 -31.82372 -29.78214 -26.74182 -25.27639 -22.86520 -20.87578 -18.13522 -17.02718 -16.93601 -16.09137 -15.86102 -15.38727 -15.07000 -14.35367 -13.38041 -13.30497 -13.09125 -12.92734 -12.41850 -12.29858 -11.93312 -11.49686 -11.17529 -10.69872 -10.48601 -10.40591 -9.26460 -8.06560 -6.20296 1.39824 1.45555 1.54345 2.42877 3.17726 3.38909 4.06829 4.36627 4.39120 4.53762 4.59155 4.79179 4.93236 5.10669 5.22156 5.29765 5.35260 5.63575 5.78142 5.81694 6.05595 6.44972 6.61074 6.80488 6.99364 7.46347 8.94488 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.050771 B = 0.019515 C = 0.017256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.359575 B = 1434.439852 C = 1622.280940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.028 3.972 3 Si 0.946 3.054 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.515 4.515 8 H 0.052 0.948 9 C 0.038 3.962 10 C 0.088 3.912 11 N -0.843 5.843 12 C -0.115 4.115 13 C 0.044 3.956 14 O -0.405 6.405 15 C 0.061 3.939 16 H 0.259 0.741 17 H 0.028 0.972 18 H 0.030 0.970 19 H 0.330 0.670 20 H 0.341 0.659 21 H 0.052 0.948 22 H 0.040 0.960 23 H 0.098 0.902 24 H 0.055 0.945 25 H 0.088 0.912 26 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.215 -2.028 0.383 2.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.173 4.173 3 Si 0.773 3.227 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.553 4.553 8 H 0.071 0.929 9 C 0.037 3.963 10 C -0.043 4.043 11 N -0.371 5.371 12 C -0.154 4.154 13 C -0.032 4.032 14 O -0.325 6.325 15 C -0.015 4.015 16 H 0.068 0.932 17 H 0.047 0.953 18 H 0.048 0.952 19 H 0.141 0.859 20 H 0.155 0.845 21 H 0.071 0.929 22 H 0.059 0.941 23 H 0.116 0.884 24 H 0.073 0.927 25 H 0.107 0.893 26 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.342 -2.816 0.693 3.196 hybrid contribution -0.278 2.216 -0.221 2.245 sum 1.064 -0.599 0.472 1.310 Atomic orbital electron populations 1.70061 1.06774 1.26798 1.50512 1.25534 0.95448 1.01506 0.94772 0.85687 0.79271 0.80495 0.77226 1.19414 1.21079 1.21236 1.21219 0.92889 0.90676 1.50502 0.92930 1.19484 0.92280 0.92949 0.91549 1.21555 0.94804 0.96656 0.91313 1.58841 1.23917 1.50247 1.04142 1.22665 0.98278 0.96725 0.97695 1.23516 0.96899 0.91456 0.91347 1.88931 1.71566 1.31672 1.40324 1.23527 0.94945 0.90659 0.92406 0.93216 0.95309 0.95185 0.85893 0.84539 0.92921 0.94069 0.88430 0.92669 0.89335 0.94058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.02 10.57 21.45 0.23 -47.80 15 2 C 0.03 1.41 4.89 84.65 0.41 1.82 15 3 Si 0.95 41.30 29.54 68.60 2.03 43.33 15 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 15 5 H -0.28 -12.32 7.11 99.48 0.71 -11.62 15 6 H -0.29 -12.52 7.11 99.48 0.71 -11.82 15 7 C -0.51 -26.17 6.72 25.60 0.17 -25.99 15 8 H 0.05 2.70 7.64 -2.91 -0.02 2.67 15 9 C 0.04 1.82 0.48 -51.91 -0.03 1.79 15 10 C 0.09 4.08 5.44 86.30 0.47 4.55 15 11 N -0.84 -34.40 8.84 -186.71 -1.65 -36.05 15 12 C -0.11 -5.30 5.45 31.61 0.17 -5.12 15 13 C 0.04 1.75 7.63 72.48 0.55 2.30 15 14 O -0.41 -17.64 11.65 -148.98 -1.74 -19.38 15 15 C 0.06 2.71 6.62 72.48 0.48 3.19 15 16 H 0.26 13.31 8.31 -92.71 -0.77 12.54 15 17 H 0.03 1.32 8.14 -2.38 -0.02 1.30 15 18 H 0.03 1.55 6.37 -2.39 -0.02 1.53 15 19 H 0.33 11.73 9.08 -89.69 -0.81 10.92 15 20 H 0.34 14.55 7.85 -89.69 -0.70 13.85 15 21 H 0.05 2.62 7.14 -2.39 -0.02 2.61 15 22 H 0.04 1.92 7.73 -2.38 -0.02 1.90 15 23 H 0.10 3.29 8.14 -2.39 -0.02 3.27 15 24 H 0.06 2.06 8.14 -2.39 -0.02 2.04 15 25 H 0.09 3.88 7.26 -2.39 -0.02 3.86 15 26 H 0.04 1.82 7.75 -2.39 -0.02 1.80 15 Total: -1.00 -54.13 212.73 0.77 -53.37 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: -0.34 Total: 23.99 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: 2.24 Total: -17.46 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -1.42 Total: -83.85 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -1.74 Total: -19.38 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -54.13 0.77 -53.37 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414174.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.945 kcal (2) G-P(sol) polarization free energy of solvation -54.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds