Wall clock time and date at job start Mon Mar 30 2020 01:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86807 * 119.99522 * 2 1 4 4 H 1.48494 * 109.47316 * 274.80275 * 3 2 1 5 5 H 1.48504 * 109.47053 * 34.80300 * 3 2 1 6 6 H 1.48498 * 109.47246 * 154.80032 * 3 2 1 7 7 C 1.40132 * 120.00606 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00197 * 163.29220 * 7 2 1 9 9 C 1.41495 * 119.99772 * 343.29456 * 7 2 1 10 10 N 1.28810 * 118.02697 * 159.01203 * 9 7 2 11 11 C 1.44704 * 128.40629 * 181.47229 * 10 9 7 12 12 C 1.52431 * 112.69054 * 340.17174 * 11 10 9 13 13 C 1.53475 * 109.01496 * 55.99809 * 12 11 10 14 14 S 1.76042 * 118.01942 * 339.02202 * 9 7 2 15 15 H 0.96995 * 120.01098 * 359.97438 * 1 2 3 16 16 H 1.09002 * 108.84108 * 219.33977 * 11 10 9 17 17 H 1.09006 * 108.75599 * 100.93646 * 11 10 9 18 18 H 1.09001 * 109.54413 * 296.13915 * 12 11 10 19 19 H 1.08995 * 109.55229 * 175.86462 * 12 11 10 20 20 H 1.09003 * 109.77849 * 48.35711 * 13 12 11 21 21 H 1.08999 * 109.77938 * 169.11467 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6179 0.0000 4 1 2.3862 2.1052 -1.3951 5 1 1.4920 2.6213 0.7991 6 1 3.5848 1.4133 0.5961 7 6 2.0071 -1.2135 -0.0005 8 1 3.0530 -1.2331 -0.2695 9 6 1.3445 -2.4132 0.3512 10 7 1.8597 -3.5267 -0.0413 11 6 1.3609 -4.8695 0.1633 12 6 0.3680 -4.9587 1.3164 13 6 -0.7801 -3.9717 1.0652 14 16 -0.1345 -2.2940 1.2985 15 1 -0.4851 0.8399 0.0004 16 1 2.2028 -5.5298 0.3718 17 1 0.8699 -5.2041 -0.7506 18 1 0.8698 -4.7044 2.2501 19 1 -0.0290 -5.9718 1.3785 20 1 -1.1488 -4.0866 0.0459 21 1 -1.5880 -4.1578 1.7728 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260432101.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:29 Heat of formation + Delta-G solvation = 0.522197 kcal Electronic energy + Delta-G solvation = -8046.554321 eV Core-core repulsion = 6434.078011 eV Total energy + Delta-G solvation = -1612.476310 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 171.041 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -36.04392 -33.87864 -31.07394 -27.48982 -25.12455 -21.54293 -19.09668 -17.54972 -15.35139 -15.00500 -14.16238 -13.52281 -12.81688 -12.57774 -12.24207 -11.46767 -11.24808 -11.11490 -10.79803 -10.43455 -10.14831 -9.68928 -9.00932 -8.72719 -7.12468 -6.86719 -5.82676 -4.56867 2.89598 3.13467 3.16633 3.21447 3.79719 3.97100 4.04797 5.14115 5.57175 5.59989 5.80127 6.21263 6.33815 6.39575 6.50531 6.80475 6.88094 7.22480 8.28648 8.57303 8.73535 10.04411 10.22697 Molecular weight = 171.04amu Principal moments of inertia in cm(-1) A = 0.086482 B = 0.017415 C = 0.015178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 323.690848 B = 1607.437962 C = 1844.309031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.081 3.919 3 Si 0.913 3.087 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.454 4.454 8 H 0.094 0.906 9 C 0.343 3.657 10 N -0.688 5.688 11 C 0.090 3.910 12 C -0.152 4.152 13 C -0.124 4.124 14 S -0.178 6.178 15 H 0.282 0.718 16 H 0.052 0.948 17 H 0.037 0.963 18 H 0.064 0.936 19 H 0.057 0.943 20 H 0.071 0.929 21 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.349 -1.272 1.977 2.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.141 4.141 3 Si 0.737 3.263 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.497 4.497 8 H 0.112 0.888 9 C 0.068 3.932 10 N -0.417 5.417 11 C -0.042 4.042 12 C -0.193 4.193 13 C -0.274 4.274 14 S 0.052 5.948 15 H 0.094 0.906 16 H 0.070 0.930 17 H 0.055 0.945 18 H 0.083 0.917 19 H 0.076 0.924 20 H 0.089 0.911 21 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.441 -0.678 2.203 2.718 hybrid contribution 0.006 -0.412 -0.258 0.486 sum -1.434 -1.091 1.945 2.651 Atomic orbital electron populations 1.69664 1.07201 1.28884 1.33659 1.26023 0.94835 1.01550 0.91726 0.86222 0.80745 0.80343 0.79034 1.19496 1.20032 1.18304 1.19344 0.98443 0.88720 1.43201 0.88779 1.22803 0.87537 0.93779 0.89104 1.69108 1.37894 0.96618 1.38103 1.21256 0.94703 0.93606 0.94650 1.22163 0.97766 0.98365 1.01018 1.23573 1.00249 0.99670 1.03860 1.86409 1.33328 1.09612 1.65449 0.90624 0.93007 0.94455 0.91699 0.92408 0.91071 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.00 10.89 55.55 0.61 -19.39 14 2 C 0.08 2.08 5.21 -17.35 -0.09 1.99 14 3 Si 0.91 19.01 29.59 -169.99 -5.03 13.98 14 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 14 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 14 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 14 7 C -0.45 -12.66 9.23 -37.63 -0.35 -13.01 14 8 H 0.09 2.61 7.90 -52.48 -0.41 2.19 14 9 C 0.34 9.62 6.74 -17.58 -0.12 9.50 14 10 N -0.69 -18.81 10.16 -61.75 -0.63 -19.44 14 11 C 0.09 2.04 6.91 -5.29 -0.04 2.00 14 12 C -0.15 -3.07 5.94 -26.78 -0.16 -3.23 14 13 C -0.12 -2.65 6.44 37.40 0.24 -2.41 14 14 S -0.18 -4.53 19.26 -107.50 -2.07 -6.60 14 15 H 0.28 6.66 8.29 -40.82 -0.34 6.32 14 16 H 0.05 1.09 8.14 -51.93 -0.42 0.67 14 17 H 0.04 0.83 8.14 -51.93 -0.42 0.40 14 18 H 0.06 1.35 8.07 -51.93 -0.42 0.93 14 19 H 0.06 0.97 8.14 -51.93 -0.42 0.55 14 20 H 0.07 1.54 8.10 -51.93 -0.42 1.12 14 21 H 0.08 1.54 8.14 -51.93 -0.42 1.11 14 LS Contribution 196.62 15.07 2.96 2.96 Total: -1.00 -28.83 196.62 -6.75 -35.58 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: -2.08 Total: -1.95 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -0.51 Total: -5.15 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: -0.02 Total: -38.83 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Atomic # 16 Polarization: -4.53 SS G_CDS: -2.07 Total: -6.60 kcal Total LS contribution 2.96 Total: 2.96 kcal Total: -28.83 -6.75 -35.58 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260432101.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.106 kcal (2) G-P(sol) polarization free energy of solvation -28.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds