Wall clock time and date at job start Mon Mar 30 2020 01:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86807 * 119.99522 * 2 1 4 4 H 1.48494 * 109.47316 * 274.80275 * 3 2 1 5 5 H 1.48504 * 109.47053 * 34.80300 * 3 2 1 6 6 H 1.48498 * 109.47246 * 154.80032 * 3 2 1 7 7 C 1.40132 * 120.00606 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00197 * 163.29220 * 7 2 1 9 9 C 1.41495 * 119.99772 * 343.29456 * 7 2 1 10 10 N 1.28810 * 118.02697 * 159.01203 * 9 7 2 11 11 C 1.44704 * 128.40629 * 181.47229 * 10 9 7 12 12 C 1.52431 * 112.69054 * 340.17174 * 11 10 9 13 13 C 1.53475 * 109.01496 * 55.99809 * 12 11 10 14 14 S 1.76042 * 118.01942 * 339.02202 * 9 7 2 15 15 H 0.96995 * 120.01098 * 359.97438 * 1 2 3 16 16 H 1.09002 * 108.84108 * 219.33977 * 11 10 9 17 17 H 1.09006 * 108.75599 * 100.93646 * 11 10 9 18 18 H 1.09001 * 109.54413 * 296.13915 * 12 11 10 19 19 H 1.08995 * 109.55229 * 175.86462 * 12 11 10 20 20 H 1.09003 * 109.77849 * 48.35711 * 13 12 11 21 21 H 1.08999 * 109.77938 * 169.11467 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6179 0.0000 4 1 2.3862 2.1052 -1.3951 5 1 1.4920 2.6213 0.7991 6 1 3.5848 1.4133 0.5961 7 6 2.0071 -1.2135 -0.0005 8 1 3.0530 -1.2331 -0.2695 9 6 1.3445 -2.4132 0.3512 10 7 1.8597 -3.5267 -0.0413 11 6 1.3609 -4.8695 0.1633 12 6 0.3680 -4.9587 1.3164 13 6 -0.7801 -3.9717 1.0652 14 16 -0.1345 -2.2940 1.2985 15 1 -0.4851 0.8399 0.0004 16 1 2.2028 -5.5298 0.3718 17 1 0.8699 -5.2041 -0.7506 18 1 0.8698 -4.7044 2.2501 19 1 -0.0290 -5.9718 1.3785 20 1 -1.1488 -4.0866 0.0459 21 1 -1.5880 -4.1578 1.7728 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260432101.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:29 Heat of formation + Delta-G solvation = -19.225093 kcal Electronic energy + Delta-G solvation = -8047.410628 eV Core-core repulsion = 6434.078011 eV Total energy + Delta-G solvation = -1613.332617 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 171.041 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -37.90775 -35.79514 -32.95072 -29.38793 -27.01132 -23.34578 -20.97797 -19.54254 -17.24829 -16.82097 -15.93904 -15.34087 -14.58098 -14.35328 -14.02614 -13.31741 -13.03622 -12.83784 -12.49183 -12.30934 -11.92381 -11.51375 -10.84814 -10.65071 -9.07743 -8.82475 -7.78894 -6.62266 1.10552 1.42210 1.44573 1.59204 1.87373 2.08979 2.27271 3.15520 3.88278 3.92932 4.15195 4.52671 4.64429 4.71955 4.83273 5.03512 5.17507 5.26524 6.19021 6.54918 6.73363 8.06970 8.32776 Molecular weight = 171.04amu Principal moments of inertia in cm(-1) A = 0.086482 B = 0.017415 C = 0.015178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 323.690848 B = 1607.437962 C = 1844.309031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.044 3.956 3 Si 0.988 3.012 4 H -0.260 1.260 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.494 4.494 8 H 0.081 0.919 9 C 0.320 3.680 10 N -0.721 5.721 11 C 0.078 3.922 12 C -0.142 4.142 13 C -0.114 4.114 14 S -0.211 6.211 15 H 0.292 0.708 16 H 0.066 0.934 17 H 0.042 0.958 18 H 0.057 0.943 19 H 0.102 0.898 20 H 0.066 0.934 21 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.824 -1.235 2.360 3.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.177 4.177 3 Si 0.808 3.192 4 H -0.185 1.185 5 H -0.185 1.185 6 H -0.185 1.185 7 C -0.537 4.537 8 H 0.099 0.901 9 C 0.045 3.955 10 N -0.451 5.451 11 C -0.053 4.053 12 C -0.183 4.183 13 C -0.263 4.263 14 S 0.019 5.981 15 H 0.104 0.896 16 H 0.084 0.916 17 H 0.060 0.940 18 H 0.075 0.925 19 H 0.121 0.879 20 H 0.085 0.915 21 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.929 -0.666 2.584 3.292 hybrid contribution 0.108 -0.532 -0.404 0.676 sum -1.821 -1.198 2.180 3.083 Atomic orbital electron populations 1.69733 1.08481 1.30508 1.32811 1.26836 0.95707 1.04454 0.90657 0.85106 0.79052 0.75522 0.79520 1.18505 1.18472 1.18546 1.19600 0.98316 0.90443 1.45314 0.90138 1.22999 0.88713 0.94132 0.89678 1.69071 1.39222 0.98233 1.38553 1.21407 0.96179 0.91612 0.96084 1.22066 0.96548 1.00414 0.99237 1.23644 1.01327 0.96759 1.04561 1.86235 1.32840 1.14107 1.64923 0.89619 0.91603 0.93994 0.92462 0.87925 0.91528 0.86603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.98 10.89 21.85 0.24 -40.74 14 2 C 0.04 2.25 5.21 85.33 0.44 2.70 14 3 Si 0.99 38.68 29.59 68.60 2.03 40.71 14 4 H -0.26 -9.75 7.11 99.48 0.71 -9.04 14 5 H -0.26 -9.51 7.11 99.48 0.71 -8.80 14 6 H -0.26 -10.23 7.11 99.48 0.71 -9.53 14 7 C -0.49 -28.13 9.23 23.53 0.22 -27.91 14 8 H 0.08 4.62 7.90 -2.91 -0.02 4.60 14 9 C 0.32 18.18 6.74 85.94 0.58 18.76 14 10 N -0.72 -39.69 10.16 -349.27 -3.55 -43.24 14 11 C 0.08 3.46 6.91 86.53 0.60 4.05 14 12 C -0.14 -5.35 5.94 30.57 0.18 -5.16 14 13 C -0.11 -4.60 6.44 72.14 0.46 -4.13 14 14 S -0.21 -10.67 19.26 -56.49 -1.09 -11.76 14 15 H 0.29 13.59 8.29 -92.71 -0.77 12.82 14 16 H 0.07 2.68 8.14 -2.39 -0.02 2.66 14 17 H 0.04 1.80 8.14 -2.38 -0.02 1.78 14 18 H 0.06 2.26 8.07 -2.39 -0.02 2.24 14 19 H 0.10 2.99 8.14 -2.39 -0.02 2.97 14 20 H 0.07 2.75 8.10 -2.39 -0.02 2.73 14 21 H 0.12 3.90 8.14 -2.39 -0.02 3.88 14 Total: -1.00 -61.75 196.62 1.33 -60.42 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 1.21 Total: 6.30 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 2.48 Total: -11.69 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -3.31 Total: -83.98 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Atomic # 16 Polarization: -10.67 SS G_CDS: -1.09 Total: -11.76 kcal Total: -61.75 1.33 -60.42 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260432101.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.197 kcal (2) G-P(sol) polarization free energy of solvation -61.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds