Wall clock time and date at job start Mon Mar 30 2020 01:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99661 * 2 1 4 4 H 1.48506 * 109.47017 * 269.99862 * 3 2 1 5 5 H 1.48498 * 109.47421 * 29.99946 * 3 2 1 6 6 H 1.48504 * 109.47023 * 149.99998 * 3 2 1 7 7 C 1.37869 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99971 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00387 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47379 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.57272 * 307.71235 * 10 9 7 12 12 C 1.54086 * 110.52191 * 185.00304 * 10 9 7 13 13 N 1.47093 * 103.90691 * 241.29421 * 12 10 9 14 14 C 1.34326 * 108.70566 * 0.12778 * 13 12 10 15 15 O 1.21505 * 123.02465 * 179.91250 * 14 13 12 16 16 O 1.33768 * 113.90161 * 359.85928 * 14 13 12 17 17 H 0.96998 * 120.00268 * 0.02562 * 1 2 3 18 18 H 1.09003 * 109.46778 * 60.00464 * 9 7 2 19 19 H 1.08995 * 109.47254 * 300.00671 * 9 7 2 20 20 H 1.09002 * 110.56553 * 359.94291 * 12 10 9 21 21 H 1.08999 * 110.56236 * 122.65022 * 12 10 9 22 22 H 0.96998 * 125.56064 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9688 -3.5475 -0.8078 12 6 1.5038 -5.0068 -0.1264 13 7 1.8500 -5.7189 1.1133 14 6 2.6542 -4.9349 1.8502 15 8 3.0960 -5.2697 2.9313 16 8 2.9250 -3.7530 1.2851 17 1 -0.4850 0.8400 -0.0004 18 1 0.6242 -2.5567 -0.8904 19 1 0.6248 -2.5571 0.8896 20 1 0.4274 -4.8462 -0.1878 21 1 1.8577 -5.5592 -0.9968 22 1 1.5458 -6.6070 1.3575 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260437093.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:07 Heat of formation + Delta-G solvation = -84.549304 kcal Electronic energy + Delta-G solvation = -9817.247049 eV Core-core repulsion = 7758.328891 eV Total energy + Delta-G solvation = -2058.918158 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.86123 -36.74332 -34.17336 -33.30835 -30.63738 -26.68808 -23.41250 -21.94142 -21.10422 -17.53471 -16.68230 -16.11577 -15.76577 -14.49613 -14.22963 -13.72731 -13.29655 -12.59589 -12.23577 -11.75853 -11.31981 -10.71277 -10.68806 -10.31739 -10.16648 -9.50505 -9.30544 -8.92495 -8.48194 -6.11053 -4.13709 3.21872 3.29121 3.30332 3.36494 3.42128 4.18592 4.39503 4.80878 5.26207 5.27024 5.46889 5.77632 6.10394 6.33664 7.11492 7.26627 7.42575 7.84088 7.89999 8.21061 8.55506 8.90129 9.51197 11.00316 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.078133 B = 0.012436 C = 0.011509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.275649 B = 2250.984076 C = 2432.275162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.014 3.986 10 C 0.076 3.924 11 H 0.105 0.895 12 C 0.065 3.935 13 N -0.744 5.744 14 C 0.642 3.358 15 O -0.547 6.547 16 O -0.310 6.310 17 H 0.263 0.737 18 H 0.044 0.956 19 H 0.029 0.971 20 H 0.091 0.909 21 H 0.082 0.918 22 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.044 -7.982 -3.189 8.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.023 4.023 10 C 0.021 3.979 11 H 0.123 0.877 12 C -0.060 4.060 13 N -0.416 5.416 14 C 0.395 3.605 15 O -0.434 6.434 16 O -0.219 6.219 17 H 0.072 0.928 18 H 0.062 0.938 19 H 0.048 0.952 20 H 0.109 0.891 21 H 0.100 0.900 22 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 1.332 -7.636 -2.604 8.177 hybrid contribution 0.077 0.465 -0.065 0.476 sum 1.409 -7.171 -2.668 7.780 Atomic orbital electron populations 1.69941 1.06102 1.27011 1.50423 1.24988 0.94888 0.99486 0.94919 0.86498 0.79981 0.82936 0.78102 1.20577 1.21163 1.19651 1.21093 0.93330 0.90290 1.51191 0.92047 1.19529 0.93041 0.90806 0.98895 1.24358 0.95621 0.95546 0.82357 0.87718 1.23033 1.02252 0.93318 0.87366 1.46049 1.53163 1.20506 1.21928 1.18864 0.77920 0.79838 0.83833 1.90980 1.58071 1.74765 1.19603 1.87401 1.66616 1.32572 1.35322 0.92774 0.93828 0.95227 0.89078 0.89986 0.73221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.96 13.29 55.43 0.74 -25.22 14 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 14 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 14 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 14 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 14 6 H -0.27 -6.48 7.11 56.52 0.40 -6.07 14 7 C -0.52 -14.23 9.03 -34.44 -0.31 -14.54 14 8 H 0.06 1.66 7.74 -52.48 -0.41 1.26 14 9 C 0.01 0.34 4.53 -27.88 -0.13 0.21 14 10 C 0.08 1.45 3.76 -26.16 -0.10 1.35 14 11 H 0.10 1.81 8.14 -51.93 -0.42 1.39 14 12 C 0.07 0.92 7.70 -3.15 -0.02 0.89 14 13 N -0.74 -11.22 6.42 -64.64 -0.42 -11.64 14 14 C 0.64 13.10 9.16 53.85 0.49 13.59 14 15 O -0.55 -12.75 18.04 -19.11 -0.34 -13.10 14 16 O -0.31 -6.89 10.71 -37.82 -0.40 -7.29 14 17 H 0.26 7.21 8.31 -40.82 -0.34 6.87 14 18 H 0.04 1.03 8.14 -51.93 -0.42 0.60 14 19 H 0.03 0.77 8.14 -51.93 -0.42 0.35 14 20 H 0.09 1.21 7.73 -51.93 -0.40 0.81 14 21 H 0.08 0.88 8.14 -51.93 -0.42 0.46 14 22 H 0.43 5.00 8.96 -40.82 -0.37 4.63 14 LS Contribution 204.27 15.07 3.08 3.08 Total: -1.00 -32.38 204.27 -4.53 -36.91 By element: Atomic # 1 Polarization: -0.18 SS G_CDS: -2.00 Total: -2.18 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -0.16 Total: 3.05 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.32 Total: -36.86 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.75 Total: -20.39 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.08 Total: 3.08 kcal Total: -32.38 -4.53 -36.91 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260437093.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.636 kcal (2) G-P(sol) polarization free energy of solvation -32.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds