Wall clock time and date at job start Mon Mar 30 2020 01:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.46779 * 54.30005 * 10 9 7 12 12 C 1.54090 * 110.52350 * 176.93134 * 10 9 7 13 13 N 1.47417 * 103.62382 * 118.59397 * 12 10 9 14 14 C 1.34000 * 108.90798 * 0.10914 * 13 12 10 15 15 O 1.21519 * 123.06984 * 179.88810 * 14 13 12 16 16 O 1.33764 * 113.85963 * 359.92872 * 14 13 12 17 17 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 18 18 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 19 19 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 20 20 H 1.08999 * 110.56607 * 237.20561 * 12 10 9 21 21 H 1.09003 * 110.56211 * 0.05457 * 12 10 9 22 22 H 0.96993 * 125.52483 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9459 -3.5646 0.8288 12 6 1.5010 -5.0091 0.0767 13 7 1.8818 -5.6886 -1.1749 14 6 2.7053 -4.8910 -1.8687 15 8 3.1781 -5.2009 -2.9444 16 8 2.9601 -3.7230 -1.2686 17 1 -0.4850 0.8401 0.0004 18 1 0.6247 -2.5571 0.8897 19 1 0.6240 -2.5568 -0.8903 20 1 1.8344 -5.5817 0.9422 21 1 0.4233 -4.8495 0.1141 22 1 1.5859 -6.5703 -1.4501 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260437097.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:08 Heat of formation + Delta-G solvation = -84.195650 kcal Electronic energy + Delta-G solvation = -9821.510018 eV Core-core repulsion = 7762.607196 eV Total energy + Delta-G solvation = -2058.902823 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.86480 -36.73498 -34.15975 -33.30295 -30.64181 -26.70016 -23.41204 -21.93750 -21.09241 -17.52872 -16.66571 -16.12720 -15.76128 -14.49823 -14.21934 -13.72650 -13.29011 -12.58995 -12.23297 -11.75869 -11.30953 -10.73450 -10.66980 -10.31168 -10.15639 -9.49879 -9.31578 -8.93295 -8.47335 -6.10585 -4.13180 3.22825 3.30191 3.32348 3.36197 3.40533 4.18673 4.39917 4.80542 5.26043 5.27408 5.47071 5.77148 6.10193 6.33689 7.11052 7.26781 7.42569 7.84543 7.90531 8.21671 8.56331 8.90486 9.51577 11.00754 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.077263 B = 0.012533 C = 0.011557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.312791 B = 2233.542932 C = 2422.235021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.287 1.287 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.015 3.985 10 C 0.076 3.924 11 H 0.105 0.895 12 C 0.066 3.934 13 N -0.744 5.744 14 C 0.642 3.358 15 O -0.548 6.548 16 O -0.310 6.310 17 H 0.263 0.737 18 H 0.044 0.956 19 H 0.029 0.971 20 H 0.083 0.917 21 H 0.092 0.908 22 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.940 -8.054 3.080 8.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.213 1.213 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.022 4.022 10 C 0.020 3.980 11 H 0.122 0.878 12 C -0.059 4.059 13 N -0.416 5.416 14 C 0.396 3.604 15 O -0.435 6.435 16 O -0.219 6.219 17 H 0.073 0.927 18 H 0.062 0.938 19 H 0.047 0.953 20 H 0.101 0.899 21 H 0.110 0.890 22 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 1.238 -7.690 2.519 8.186 hybrid contribution 0.092 0.459 0.034 0.469 sum 1.330 -7.232 2.553 7.784 Atomic orbital electron populations 1.69931 1.06099 1.27111 1.50357 1.24989 0.94888 0.99470 0.94910 0.86554 0.79525 0.82561 0.78827 1.21272 1.20114 1.20032 1.21050 0.93312 0.90289 1.51300 0.92084 1.19525 0.93015 0.90826 0.98868 1.24339 0.94984 0.95572 0.83067 0.87761 1.23100 1.02044 0.93738 0.87008 1.46054 1.51580 1.21183 1.22769 1.18774 0.78150 0.79755 0.83766 1.90986 1.57353 1.75426 1.19766 1.87399 1.65516 1.33530 1.35444 0.92723 0.93846 0.95272 0.89918 0.88994 0.73278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.98 13.29 55.43 0.74 -25.25 14 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 14 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 14 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 14 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 14 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 14 7 C -0.52 -14.27 8.99 -34.44 -0.31 -14.58 14 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 14 9 C 0.01 0.35 4.54 -27.89 -0.13 0.22 14 10 C 0.08 1.44 3.77 -26.16 -0.10 1.34 14 11 H 0.10 1.80 8.14 -51.93 -0.42 1.38 14 12 C 0.07 0.92 7.73 -2.97 -0.02 0.90 14 13 N -0.74 -11.23 6.41 -64.50 -0.41 -11.65 14 14 C 0.64 13.12 9.16 53.71 0.49 13.61 14 15 O -0.55 -12.80 18.04 -19.12 -0.35 -13.15 14 16 O -0.31 -6.89 10.67 -37.81 -0.40 -7.30 14 17 H 0.26 7.25 8.31 -40.82 -0.34 6.91 14 18 H 0.04 1.02 8.14 -51.92 -0.42 0.60 14 19 H 0.03 0.76 8.14 -51.93 -0.42 0.34 14 20 H 0.08 0.88 8.14 -51.93 -0.42 0.46 14 21 H 0.09 1.22 7.73 -51.93 -0.40 0.82 14 22 H 0.43 5.01 8.96 -40.82 -0.37 4.64 14 LS Contribution 204.22 15.07 3.08 3.08 Total: -1.00 -32.43 204.22 -4.53 -36.96 By element: Atomic # 1 Polarization: -0.18 SS G_CDS: -2.00 Total: -2.18 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -0.16 Total: 3.04 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.32 Total: -36.89 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.75 Total: -20.45 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 3.08 Total: 3.08 kcal Total: -32.43 -4.53 -36.96 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260437097.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.236 kcal (2) G-P(sol) polarization free energy of solvation -32.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds