Wall clock time and date at job start Mon Mar 30 2020 01:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31146 * 1 3 3 Si 1.86795 * 120.00253 * 2 1 4 4 H 1.48502 * 109.46812 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47497 * 119.99464 * 3 2 1 6 6 H 1.48505 * 109.47190 * 239.99980 * 3 2 1 7 7 C 1.39635 * 119.99914 * 180.26953 * 2 1 3 8 8 H 1.07999 * 119.99958 * 3.71517 * 7 2 1 9 9 C 1.40972 * 119.99949 * 183.71253 * 7 2 1 10 10 N 1.32783 * 122.95274 * 6.11863 * 9 7 2 11 11 N 1.27858 * 118.90449 * 179.78016 * 10 9 7 12 12 S 1.69701 * 107.61095 * 0.45346 * 11 10 9 13 13 C 1.40350 * 122.95492 * 186.40481 * 9 7 2 14 14 N 1.37744 * 127.86195 * 0.02562 * 13 9 7 15 15 H 0.97005 * 119.99547 * 174.87505 * 1 2 3 16 16 H 0.97003 * 119.99911 * 359.97438 * 14 13 9 17 17 H 0.96996 * 119.99753 * 179.97438 * 14 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3115 0.0000 0.0000 3 14 2.2455 1.6177 0.0000 4 1 1.2805 2.7464 -0.0006 5 1 3.0992 1.6964 1.2125 6 1 3.0993 1.6963 -1.2125 7 6 2.0096 -1.2093 -0.0057 8 1 1.4713 -2.1433 -0.0707 9 6 3.4171 -1.2109 0.0734 10 7 4.1306 -0.1091 0.2734 11 7 5.4043 -0.2005 0.3362 12 16 5.8135 -1.8325 0.1143 13 6 4.1878 -2.3765 -0.0583 14 7 3.7453 -3.6625 -0.2769 15 1 -0.4850 -0.8368 -0.0750 16 1 2.7953 -3.8413 -0.3573 17 1 4.3836 -4.3891 -0.3504 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260497813.mol2 17 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:05 Heat of formation + Delta-G solvation = 42.314747 kcal Electronic energy + Delta-G solvation = -7867.133731 eV Core-core repulsion = 6152.929339 eV Total energy + Delta-G solvation = -1714.204393 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 171.016 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -38.68435 -34.44852 -33.27648 -29.44372 -25.11760 -23.93575 -19.78747 -18.78457 -17.18478 -15.73036 -15.06047 -14.08106 -13.90025 -13.02685 -12.39016 -11.56515 -10.95633 -10.70501 -10.63285 -9.91015 -9.52472 -9.15364 -8.40619 -8.31968 -7.27293 -7.09997 -4.40109 1.53082 2.24124 2.88850 3.38878 3.62499 3.96084 4.00891 4.41515 4.71635 5.23472 5.91643 6.15332 7.61489 7.77873 8.06469 8.15679 8.22180 8.79473 9.26005 10.25012 Molecular weight = 171.02amu Principal moments of inertia in cm(-1) A = 0.063312 B = 0.023152 C = 0.017115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.148902 B = 1209.130825 C = 1635.555423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.047 3.953 3 Si 1.111 2.889 4 H -0.311 1.311 5 H -0.270 1.270 6 H -0.286 1.286 7 C -0.492 4.492 8 H 0.079 0.921 9 C 0.101 3.899 10 N -0.253 5.253 11 N -0.258 5.258 12 S 0.119 5.881 13 C -0.012 4.012 14 N -0.816 5.816 15 H 0.278 0.722 16 H 0.403 0.597 17 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.641 -5.281 -0.723 7.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.170 4.170 3 Si 0.942 3.058 4 H -0.241 1.241 5 H -0.196 1.196 6 H -0.213 1.213 7 C -0.531 4.531 8 H 0.097 0.903 9 C -0.040 4.040 10 N -0.123 5.123 11 N -0.235 5.235 12 S 0.247 5.753 13 C -0.255 4.255 14 N -0.365 5.365 15 H 0.089 0.911 16 H 0.234 0.766 17 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 6.997 -2.479 -0.379 7.433 hybrid contribution -1.428 -3.062 -0.335 3.396 sum 5.569 -5.542 -0.714 7.889 Atomic orbital electron populations 1.70779 1.07546 1.32017 1.35650 1.27201 0.95571 1.04687 0.89566 0.82688 0.71974 0.71399 0.79737 1.24146 1.19625 1.21289 1.19505 0.87618 0.96293 1.49637 0.90292 1.19406 0.96724 0.83774 1.04138 1.69987 0.99669 1.26750 1.15937 1.82113 1.07406 1.03142 1.30875 1.83681 1.09878 1.13179 1.68554 1.23228 0.95190 0.91519 1.15575 1.40469 1.09722 1.03065 1.83232 0.91134 0.76640 0.77795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.47 13.67 55.53 0.76 -22.71 13 2 C 0.05 1.32 5.51 -17.32 -0.10 1.22 13 3 Si 1.11 28.48 25.72 -169.99 -4.37 24.11 13 4 H -0.31 -7.75 7.11 56.52 0.40 -7.34 13 5 H -0.27 -6.98 6.70 56.52 0.38 -6.61 13 6 H -0.29 -7.37 7.11 56.52 0.40 -6.97 13 7 C -0.49 -13.43 9.55 -38.03 -0.36 -13.79 13 8 H 0.08 2.09 7.31 -52.49 -0.38 1.71 13 9 C 0.10 2.63 6.36 -85.63 -0.54 2.08 13 10 N -0.25 -6.76 6.34 31.86 0.20 -6.56 13 11 N -0.26 -6.37 13.25 60.35 0.80 -5.57 13 12 S 0.12 2.42 23.84 -107.50 -2.56 -0.14 13 13 C -0.01 -0.25 7.85 -14.10 -0.11 -0.36 13 14 N -0.82 -14.00 9.03 31.83 0.29 -13.71 13 15 H 0.28 7.48 8.73 -40.82 -0.36 7.12 13 16 H 0.40 6.69 8.04 -40.82 -0.33 6.37 13 17 H 0.39 5.29 8.95 -40.82 -0.37 4.93 13 LS Contribution 175.05 15.07 2.64 2.64 Total: -1.00 -29.97 175.05 -3.61 -33.58 By element: Atomic # 1 Polarization: -0.54 SS G_CDS: -0.25 Total: -0.79 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -1.11 Total: -10.85 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 2.05 Total: -48.55 kcal Atomic # 14 Polarization: 28.48 SS G_CDS: -4.37 Total: 24.11 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -2.56 Total: -0.14 kcal Total LS contribution 2.64 Total: 2.64 kcal Total: -29.97 -3.61 -33.58 kcal The number of atoms in the molecule is 17 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260497813.mol2 17 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.897 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds