Wall clock time and date at job start Mon Mar 30 2020 01:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31146 * 1 3 3 Si 1.86795 * 120.00253 * 2 1 4 4 H 1.48502 * 109.46812 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47497 * 119.99464 * 3 2 1 6 6 H 1.48505 * 109.47190 * 239.99980 * 3 2 1 7 7 C 1.39635 * 119.99914 * 180.26953 * 2 1 3 8 8 H 1.07999 * 119.99958 * 3.71517 * 7 2 1 9 9 C 1.40972 * 119.99949 * 183.71253 * 7 2 1 10 10 N 1.32783 * 122.95274 * 6.11863 * 9 7 2 11 11 N 1.27858 * 118.90449 * 179.78016 * 10 9 7 12 12 S 1.69701 * 107.61095 * 0.45346 * 11 10 9 13 13 C 1.40350 * 122.95492 * 186.40481 * 9 7 2 14 14 N 1.37744 * 127.86195 * 0.02562 * 13 9 7 15 15 H 0.97005 * 119.99547 * 174.87505 * 1 2 3 16 16 H 0.97003 * 119.99911 * 359.97438 * 14 13 9 17 17 H 0.96996 * 119.99753 * 179.97438 * 14 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3115 0.0000 0.0000 3 14 2.2455 1.6177 0.0000 4 1 1.2805 2.7464 -0.0006 5 1 3.0992 1.6964 1.2125 6 1 3.0993 1.6963 -1.2125 7 6 2.0096 -1.2093 -0.0057 8 1 1.4713 -2.1433 -0.0707 9 6 3.4171 -1.2109 0.0734 10 7 4.1306 -0.1091 0.2734 11 7 5.4043 -0.2005 0.3362 12 16 5.8135 -1.8325 0.1143 13 6 4.1878 -2.3765 -0.0583 14 7 3.7453 -3.6625 -0.2769 15 1 -0.4850 -0.8368 -0.0750 16 1 2.7953 -3.8413 -0.3573 17 1 4.3836 -4.3891 -0.3504 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260497813.mol2 17 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:05 Heat of formation + Delta-G solvation = 18.690041 kcal Electronic energy + Delta-G solvation = -7868.158175 eV Core-core repulsion = 6152.929339 eV Total energy + Delta-G solvation = -1715.228837 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 171.016 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.54278 -36.21392 -35.23602 -31.30758 -27.00482 -25.81937 -21.72948 -20.60446 -19.03408 -17.52390 -16.74844 -15.96493 -15.81978 -14.98606 -14.36337 -13.45031 -12.82278 -12.58625 -12.45140 -11.78662 -11.51191 -11.16179 -10.23646 -10.18127 -9.19199 -8.97058 -6.39817 -0.26346 0.41633 1.12666 1.38090 1.59909 1.96496 2.01814 2.42360 3.12952 3.18385 4.04825 4.25467 5.60127 5.93847 6.11170 6.29449 6.76002 6.84387 7.45051 8.23303 Molecular weight = 171.02amu Principal moments of inertia in cm(-1) A = 0.063312 B = 0.023152 C = 0.017115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.148902 B = 1209.130825 C = 1635.555423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.017 3.983 3 Si 1.143 2.857 4 H -0.308 1.308 5 H -0.279 1.279 6 H -0.293 1.293 7 C -0.514 4.514 8 H 0.077 0.923 9 C 0.062 3.938 10 N -0.288 5.288 11 N -0.313 5.313 12 S 0.216 5.784 13 C 0.027 3.973 14 N -0.785 5.785 15 H 0.276 0.724 16 H 0.411 0.589 17 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.266 -7.181 -0.934 10.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.195 4.195 3 Si 0.974 3.026 4 H -0.239 1.239 5 H -0.206 1.206 6 H -0.221 1.221 7 C -0.553 4.553 8 H 0.095 0.905 9 C -0.083 4.083 10 N -0.155 5.155 11 N -0.289 5.289 12 S 0.344 5.656 13 C -0.221 4.221 14 N -0.335 5.335 15 H 0.086 0.914 16 H 0.243 0.757 17 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 8.656 -4.411 -0.594 9.733 hybrid contribution -1.661 -2.854 -0.300 3.316 sum 6.994 -7.265 -0.894 10.124 Atomic orbital electron populations 1.70800 1.07854 1.31889 1.39032 1.27661 0.95828 1.06228 0.89818 0.82198 0.71024 0.70494 0.78865 1.23854 1.20630 1.22082 1.19504 0.88532 0.96002 1.51294 0.90515 1.19601 0.96912 0.85274 1.06537 1.69917 1.00481 1.27533 1.17593 1.81879 1.06596 1.05945 1.34458 1.83384 1.06257 1.10172 1.65813 1.23841 0.96958 0.92172 1.09093 1.40705 1.11238 1.02000 1.79596 0.91388 0.75713 0.74839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.74 13.67 21.79 0.30 -49.44 13 2 C 0.02 0.97 5.51 85.13 0.47 1.44 13 3 Si 1.14 59.16 25.72 68.60 1.76 60.92 13 4 H -0.31 -15.38 7.11 99.48 0.71 -14.67 13 5 H -0.28 -14.67 6.70 99.48 0.67 -14.00 13 6 H -0.29 -15.25 7.11 99.48 0.71 -14.55 13 7 C -0.51 -27.92 9.55 23.28 0.22 -27.70 13 8 H 0.08 4.04 7.31 -2.91 -0.02 4.02 13 9 C 0.06 3.15 6.36 40.18 0.26 3.41 13 10 N -0.29 -15.20 6.34 -53.13 -0.34 -15.54 13 11 N -0.31 -14.90 13.25 37.02 0.49 -14.41 13 12 S 0.22 7.93 23.84 -56.49 -1.35 6.59 13 13 C 0.03 1.08 7.85 84.28 0.66 1.74 13 14 N -0.79 -23.14 9.03 -53.22 -0.48 -23.62 13 15 H 0.28 15.19 8.73 -92.70 -0.81 14.38 13 16 H 0.41 11.91 8.04 -92.71 -0.75 11.16 13 17 H 0.42 8.72 8.95 -92.71 -0.83 7.89 13 Total: -1.00 -64.06 175.05 1.67 -62.39 By element: Atomic # 1 Polarization: -5.45 SS G_CDS: -0.33 Total: -5.78 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: 1.61 Total: -21.11 kcal Atomic # 7 Polarization: -102.98 SS G_CDS: -0.03 Total: -103.01 kcal Atomic # 14 Polarization: 59.16 SS G_CDS: 1.76 Total: 60.92 kcal Atomic # 16 Polarization: 7.93 SS G_CDS: -1.35 Total: 6.59 kcal Total: -64.06 1.67 -62.39 kcal The number of atoms in the molecule is 17 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260497813.mol2 17 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.082 kcal (2) G-P(sol) polarization free energy of solvation -64.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds