Wall clock time and date at job start Mon Mar 30 2020 02:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99301 * 3 2 1 5 5 H 1.48496 * 109.47547 * 29.99797 * 3 2 1 6 6 H 1.48499 * 109.47030 * 149.99701 * 3 2 1 7 7 C 1.37870 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00310 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 11 11 N 1.46902 * 109.46577 * 299.99860 * 9 7 2 12 12 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 13 13 H 1.09000 * 109.86988 * 58.98881 * 12 9 7 14 14 C 1.54103 * 109.87799 * 179.97438 * 12 9 7 15 15 C 1.54807 * 104.18619 * 121.45324 * 14 12 9 16 16 C 1.54993 * 102.09520 * 20.87876 * 15 14 12 17 17 O 1.43746 * 109.87948 * 297.82824 * 12 9 7 18 18 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 19 19 H 1.00896 * 111.00210 * 300.00030 * 11 9 7 20 20 H 1.00901 * 111.00140 * 63.95755 * 11 9 7 21 21 H 1.09000 * 110.48442 * 240.13183 * 14 12 9 22 22 H 1.08994 * 110.48740 * 2.64382 * 14 12 9 23 23 H 1.09000 * 110.90679 * 139.07944 * 15 14 12 24 24 H 1.08996 * 110.90812 * 262.68047 * 15 14 12 25 25 H 1.09005 * 110.61828 * 81.47461 * 16 15 14 26 26 H 1.08996 * 110.62016 * 204.47318 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8746 -0.6798 0.8911 11 7 4.0016 -0.5017 -1.1984 12 6 4.0216 -2.6364 0.0010 13 1 3.6475 -3.1616 -0.8779 14 6 5.5626 -2.6473 0.0009 15 6 5.9365 -3.4332 1.2812 16 6 4.6376 -4.2302 1.5640 17 8 3.5891 -3.3079 1.1961 18 1 -0.4850 0.8400 -0.0004 19 1 3.6784 -0.9594 -2.0374 20 1 3.7322 0.4706 -1.1902 21 1 5.9404 -3.1584 -0.8846 22 1 5.9513 -1.6301 0.0481 23 1 6.7730 -4.1065 1.0939 24 1 6.1624 -2.7536 2.1028 25 1 4.5946 -5.1263 0.9449 26 1 4.5682 -4.4888 2.6206 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260587192.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:54 Heat of formation + Delta-G solvation = -47.121792 kcal Electronic energy + Delta-G solvation = -10326.226335 eV Core-core repulsion = 8404.764250 eV Total energy + Delta-G solvation = -1921.462085 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.77415 -34.68828 -31.83648 -31.26047 -28.31585 -25.84744 -22.69359 -21.15377 -19.61463 -17.03054 -15.85991 -15.48819 -14.70613 -14.43033 -13.83401 -13.04948 -12.74782 -12.18991 -11.77461 -11.55477 -11.09012 -10.78822 -10.70101 -10.40515 -10.05870 -9.84335 -9.49753 -8.78255 -8.66262 -7.52002 -6.11224 -4.11638 3.18107 3.33022 3.33951 4.32588 4.50206 5.14561 5.21309 5.29972 5.47363 5.73575 5.78874 5.96945 6.14185 6.17436 6.25598 6.43900 6.59856 6.73924 7.18913 7.59183 7.74139 8.13436 8.33780 8.61161 8.99879 9.49134 11.02432 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.067590 B = 0.016025 C = 0.014247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.160180 B = 1746.850088 C = 1964.905531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.067 3.933 3 Si 0.874 3.126 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.261 1.261 7 C -0.536 4.536 8 H 0.077 0.923 9 C 0.176 3.824 10 H 0.044 0.956 11 N -0.848 5.848 12 C 0.101 3.899 13 H 0.055 0.945 14 C -0.143 4.143 15 C -0.158 4.158 16 C 0.041 3.959 17 O -0.357 6.357 18 H 0.264 0.736 19 H 0.331 0.669 20 H 0.319 0.681 21 H 0.062 0.938 22 H 0.084 0.916 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.342 -3.960 0.275 11.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.135 4.135 3 Si 0.703 3.297 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.186 1.186 7 C -0.576 4.576 8 H 0.095 0.905 9 C 0.067 3.933 10 H 0.062 0.938 11 N -0.382 5.382 12 C 0.043 3.957 13 H 0.073 0.927 14 C -0.181 4.181 15 C -0.195 4.195 16 C -0.036 4.036 17 O -0.275 6.275 18 H 0.074 0.926 19 H 0.142 0.858 20 H 0.135 0.865 21 H 0.081 0.919 22 H 0.102 0.898 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.068 0.932 26 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.708 -3.996 0.680 11.450 hybrid contribution -0.546 1.041 -0.314 1.217 sum 10.162 -2.955 0.366 10.590 Atomic orbital electron populations 1.69914 1.06192 1.26857 1.50419 1.25072 0.94861 0.98999 0.94616 0.87005 0.80348 0.84033 0.78301 1.20363 1.21892 1.18566 1.21743 0.90365 0.94856 1.50640 0.90492 1.19477 0.94139 0.89590 0.90136 0.93767 1.59593 1.66840 1.05731 1.06063 1.22516 0.91302 0.94660 0.87188 0.92658 1.22946 0.97038 1.01554 0.96582 1.23155 0.98098 0.99287 0.98990 1.23475 0.87076 0.92972 1.00095 1.89035 1.39957 1.54396 1.44088 0.92648 0.85825 0.86547 0.91876 0.89759 0.91284 0.91039 0.93168 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.89 13.96 55.43 0.77 -27.12 15 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 15 3 Si 0.87 21.64 24.61 -169.99 -4.18 17.45 15 4 H -0.28 -6.51 7.01 56.52 0.40 -6.11 15 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 15 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 15 7 C -0.54 -15.55 9.03 -34.44 -0.31 -15.87 15 8 H 0.08 2.48 7.99 -52.49 -0.42 2.06 15 9 C 0.18 4.30 1.86 -68.86 -0.13 4.17 15 10 H 0.04 1.15 7.20 -51.93 -0.37 0.78 15 11 N -0.85 -18.66 8.55 -5.65 -0.05 -18.71 15 12 C 0.10 2.17 3.08 -26.16 -0.08 2.09 15 13 H 0.06 1.19 8.14 -51.93 -0.42 0.77 15 14 C -0.14 -2.45 6.35 -25.20 -0.16 -2.61 15 15 C -0.16 -2.32 7.15 -24.73 -0.18 -2.50 15 16 C 0.04 0.67 7.72 38.21 0.29 0.96 15 17 O -0.36 -7.92 10.89 -35.23 -0.38 -8.30 15 18 H 0.26 7.67 8.31 -40.82 -0.34 7.33 15 19 H 0.33 6.89 8.99 -39.29 -0.35 6.54 15 20 H 0.32 7.22 4.30 -39.29 -0.17 7.05 15 21 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 22 H 0.08 1.51 7.46 -51.93 -0.39 1.12 15 23 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15 24 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 26 H 0.08 1.18 8.14 -51.93 -0.42 0.76 15 LS Contribution 212.41 15.07 3.20 3.20 Total: -1.00 -31.31 212.41 -4.71 -36.02 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -3.41 Total: 9.35 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -0.66 Total: -11.90 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.73 Total: -45.83 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.38 Total: -8.30 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.18 Total: 17.45 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -31.31 -4.71 -36.02 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260587192.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.101 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds