Wall clock time and date at job start Mon Mar 30 2020 02:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99301 * 3 2 1 5 5 H 1.48496 * 109.47547 * 29.99797 * 3 2 1 6 6 H 1.48499 * 109.47030 * 149.99701 * 3 2 1 7 7 C 1.37870 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00310 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 11 11 N 1.46902 * 109.46577 * 299.99860 * 9 7 2 12 12 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 13 13 H 1.09000 * 109.86988 * 58.98881 * 12 9 7 14 14 C 1.54103 * 109.87799 * 179.97438 * 12 9 7 15 15 C 1.54807 * 104.18619 * 121.45324 * 14 12 9 16 16 C 1.54993 * 102.09520 * 20.87876 * 15 14 12 17 17 O 1.43746 * 109.87948 * 297.82824 * 12 9 7 18 18 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 19 19 H 1.00896 * 111.00210 * 300.00030 * 11 9 7 20 20 H 1.00901 * 111.00140 * 63.95755 * 11 9 7 21 21 H 1.09000 * 110.48442 * 240.13183 * 14 12 9 22 22 H 1.08994 * 110.48740 * 2.64382 * 14 12 9 23 23 H 1.09000 * 110.90679 * 139.07944 * 15 14 12 24 24 H 1.08996 * 110.90812 * 262.68047 * 15 14 12 25 25 H 1.09005 * 110.61828 * 81.47461 * 16 15 14 26 26 H 1.08996 * 110.62016 * 204.47318 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8746 -0.6798 0.8911 11 7 4.0016 -0.5017 -1.1984 12 6 4.0216 -2.6364 0.0010 13 1 3.6475 -3.1616 -0.8779 14 6 5.5626 -2.6473 0.0009 15 6 5.9365 -3.4332 1.2812 16 6 4.6376 -4.2302 1.5640 17 8 3.5891 -3.3079 1.1961 18 1 -0.4850 0.8400 -0.0004 19 1 3.6784 -0.9594 -2.0374 20 1 3.7322 0.4706 -1.1902 21 1 5.9404 -3.1584 -0.8846 22 1 5.9513 -1.6301 0.0481 23 1 6.7730 -4.1065 1.0939 24 1 6.1624 -2.7536 2.1028 25 1 4.5946 -5.1263 0.9449 26 1 4.5682 -4.4888 2.6206 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260587192.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:53 Heat of formation + Delta-G solvation = -72.432524 kcal Electronic energy + Delta-G solvation = -10327.323891 eV Core-core repulsion = 8404.764250 eV Total energy + Delta-G solvation = -1922.559641 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.30179 -36.60693 -33.95138 -32.72364 -29.87194 -27.89569 -24.36954 -22.57854 -21.32159 -19.13419 -17.65458 -17.01305 -16.28795 -16.24655 -15.60077 -14.76844 -14.35299 -14.02003 -13.60873 -13.26214 -12.80133 -12.48339 -12.11634 -11.96862 -11.73102 -11.61142 -11.27258 -10.89680 -10.42562 -9.45289 -8.37922 -6.44647 1.22030 1.31456 1.41198 2.22371 2.87919 3.15968 3.85693 3.96349 4.10365 4.26138 4.28542 4.50748 4.80865 4.85182 4.94045 5.01016 5.20160 5.25653 5.39155 5.52201 6.03713 6.19851 6.40381 6.62596 6.71098 7.20630 8.79741 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.067590 B = 0.016025 C = 0.014247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.160180 B = 1746.850088 C = 1964.905531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.006 3.994 3 Si 0.946 3.054 4 H -0.250 1.250 5 H -0.293 1.293 6 H -0.249 1.249 7 C -0.547 4.547 8 H 0.025 0.975 9 C 0.182 3.818 10 H 0.032 0.968 11 N -0.829 5.829 12 C 0.098 3.902 13 H 0.044 0.956 14 C -0.135 4.135 15 C -0.147 4.147 16 C 0.031 3.969 17 O -0.402 6.402 18 H 0.267 0.733 19 H 0.339 0.661 20 H 0.318 0.682 21 H 0.086 0.914 22 H 0.078 0.922 23 H 0.107 0.893 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.932 -3.527 0.066 13.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.192 4.192 3 Si 0.771 3.229 4 H -0.175 1.175 5 H -0.220 1.220 6 H -0.173 1.173 7 C -0.586 4.586 8 H 0.043 0.957 9 C 0.072 3.928 10 H 0.050 0.950 11 N -0.363 5.363 12 C 0.039 3.961 13 H 0.062 0.938 14 C -0.173 4.173 15 C -0.184 4.184 16 C -0.046 4.046 17 O -0.321 6.321 18 H 0.076 0.924 19 H 0.151 0.849 20 H 0.133 0.867 21 H 0.105 0.895 22 H 0.097 0.903 23 H 0.125 0.875 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 13.322 -3.586 0.457 13.804 hybrid contribution -1.427 0.783 -0.223 1.643 sum 11.895 -2.804 0.234 12.223 Atomic orbital electron populations 1.70083 1.08314 1.28204 1.51950 1.26043 0.95726 1.03434 0.93986 0.85842 0.78978 0.78262 0.79841 1.17474 1.21975 1.17275 1.22010 0.93039 0.93010 1.50575 0.95675 1.19342 0.90918 0.92089 0.90484 0.95035 1.59521 1.65827 1.05442 1.05465 1.22463 0.94393 0.92353 0.86851 0.93762 1.22874 0.93285 1.02132 0.99019 1.23141 0.98306 0.99334 0.97626 1.23820 0.86478 0.92741 1.01514 1.88984 1.42943 1.55861 1.44334 0.92394 0.84947 0.86692 0.89509 0.90283 0.87471 0.90944 0.91509 0.88218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.55 13.96 21.44 0.30 -60.25 15 2 C 0.01 0.35 5.47 84.65 0.46 0.82 15 3 Si 0.95 44.34 24.61 68.60 1.69 46.02 15 4 H -0.25 -10.59 7.01 99.48 0.70 -9.90 15 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 15 6 H -0.25 -11.10 6.54 99.48 0.65 -10.45 15 7 C -0.55 -32.64 9.03 25.60 0.23 -32.41 15 8 H 0.02 1.70 7.99 -2.91 -0.02 1.68 15 9 C 0.18 8.82 1.86 44.17 0.08 8.91 15 10 H 0.03 1.62 7.20 -2.39 -0.02 1.60 15 11 N -0.83 -34.86 8.55 -171.79 -1.47 -36.33 15 12 C 0.10 4.11 3.08 30.97 0.10 4.20 15 13 H 0.04 1.92 8.14 -2.39 -0.02 1.90 15 14 C -0.14 -4.24 6.35 31.58 0.20 -4.04 15 15 C -0.15 -3.79 7.15 31.89 0.23 -3.57 15 16 C 0.03 0.93 7.72 72.66 0.56 1.49 15 17 O -0.40 -17.89 10.89 -148.98 -1.62 -19.51 15 18 H 0.27 15.89 8.31 -92.71 -0.77 15.12 15 19 H 0.34 13.57 8.99 -89.70 -0.81 12.77 15 20 H 0.32 13.49 4.30 -89.69 -0.39 13.10 15 21 H 0.09 2.31 8.14 -2.39 -0.02 2.29 15 22 H 0.08 2.58 7.46 -2.39 -0.02 2.56 15 23 H 0.11 2.00 8.14 -2.39 -0.02 1.98 15 24 H 0.07 1.87 8.14 -2.39 -0.02 1.85 15 25 H 0.07 1.79 8.14 -2.38 -0.02 1.77 15 26 H 0.10 2.63 8.14 -2.39 -0.02 2.61 15 Total: -1.00 -69.48 212.41 0.68 -68.81 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: -0.08 Total: 25.87 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: 1.86 Total: -24.60 kcal Atomic # 7 Polarization: -95.42 SS G_CDS: -1.17 Total: -96.59 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -1.62 Total: -19.51 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.69 Total: 46.02 kcal Total: -69.48 0.68 -68.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260587192.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.625 kcal (2) G-P(sol) polarization free energy of solvation -69.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds