Wall clock time and date at job start Mon Mar 30 2020 02:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 11 11 N 1.46900 * 109.47676 * 59.99745 * 9 7 2 12 12 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 13 13 H 1.09007 * 109.82265 * 300.56568 * 12 9 7 14 14 C 1.54382 * 109.83350 * 179.58536 * 12 9 7 15 15 C 1.55304 * 102.25163 * 219.12421 * 14 12 9 16 16 C 1.54943 * 100.94172 * 34.13418 * 15 14 12 17 17 O 1.43236 * 109.83506 * 61.44468 * 12 9 7 18 18 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 19 19 H 1.00902 * 110.99636 * 296.04575 * 11 9 7 20 20 H 1.00899 * 110.99700 * 59.99648 * 11 9 7 21 21 H 1.09004 * 110.84396 * 337.31931 * 14 12 9 22 22 H 1.09000 * 110.84888 * 100.93432 * 14 12 9 23 23 H 1.08992 * 111.12761 * 276.20951 * 15 14 12 24 24 H 1.09007 * 111.11947 * 152.04751 * 15 14 12 25 25 H 1.09000 * 110.31039 * 204.63771 * 16 15 14 26 26 H 1.08998 * 110.31238 * 82.46656 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8752 -0.6797 -0.8895 11 7 4.0008 -0.5023 1.2001 12 6 4.0215 -2.6366 -0.0014 13 1 3.6528 -3.1599 0.8809 14 6 5.5653 -2.6463 -0.0113 15 6 5.8813 -3.8270 -0.9695 16 6 4.7074 -3.7126 -1.9743 17 8 3.5768 -3.3082 -1.1858 18 1 -0.4850 0.8401 0.0004 19 1 3.7314 0.4700 1.1920 20 1 3.6770 -0.9604 2.0387 21 1 5.9566 -1.7094 -0.4078 22 1 5.9584 -2.8407 0.9866 23 1 5.8546 -4.7798 -0.4410 24 1 6.8401 -3.6828 -1.4675 25 1 4.5156 -4.6775 -2.4436 26 1 4.9292 -2.9603 -2.7312 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260587197.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:56 Heat of formation + Delta-G solvation = -47.924614 kcal Electronic energy + Delta-G solvation = -10334.496717 eV Core-core repulsion = 8412.999819 eV Total energy + Delta-G solvation = -1921.496898 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.80276 -34.64611 -31.82333 -31.30694 -28.35775 -25.85376 -22.68771 -21.10680 -19.58538 -17.01729 -16.09513 -15.48350 -15.05393 -14.09464 -13.38938 -13.08526 -12.83097 -12.31635 -11.83242 -11.51818 -11.11192 -10.78971 -10.72936 -10.44664 -10.11019 -9.90900 -9.51783 -8.66609 -8.59335 -7.50236 -6.10651 -4.10711 3.18103 3.32720 3.33615 4.32844 4.49182 5.05965 5.19376 5.28344 5.46561 5.74524 5.85509 5.95055 6.09554 6.16649 6.29393 6.41248 6.62294 6.64769 7.24844 7.60152 7.83148 8.16018 8.34637 8.62557 9.01184 9.49897 11.03043 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.067758 B = 0.016021 C = 0.014387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.136692 B = 1747.296759 C = 1945.793394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.066 3.934 3 Si 0.874 3.126 4 H -0.277 1.277 5 H -0.262 1.262 6 H -0.292 1.292 7 C -0.534 4.534 8 H 0.077 0.923 9 C 0.165 3.835 10 H 0.041 0.959 11 N -0.848 5.848 12 C 0.105 3.895 13 H 0.068 0.932 14 C -0.137 4.137 15 C -0.162 4.162 16 C 0.048 3.952 17 O -0.363 6.363 18 H 0.263 0.737 19 H 0.317 0.683 20 H 0.330 0.670 21 H 0.076 0.924 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.519 -3.704 -0.509 11.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.136 4.136 3 Si 0.703 3.297 4 H -0.204 1.204 5 H -0.187 1.187 6 H -0.219 1.219 7 C -0.574 4.574 8 H 0.095 0.905 9 C 0.055 3.945 10 H 0.059 0.941 11 N -0.382 5.382 12 C 0.047 3.953 13 H 0.086 0.914 14 C -0.175 4.175 15 C -0.199 4.199 16 C -0.029 4.029 17 O -0.282 6.282 18 H 0.073 0.927 19 H 0.133 0.867 20 H 0.141 0.859 21 H 0.094 0.906 22 H 0.092 0.908 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.873 -3.814 -0.861 11.555 hybrid contribution -0.521 1.196 0.218 1.322 sum 10.352 -2.619 -0.644 10.698 Atomic orbital electron populations 1.69918 1.06179 1.26815 1.50518 1.25080 0.94853 0.98977 0.94687 0.87005 0.80286 0.84080 0.78287 1.20380 1.18662 1.21931 1.21736 0.90366 0.94826 1.50480 0.90452 1.19736 0.94316 0.90380 0.90022 0.94148 1.59614 1.66823 1.05695 1.06092 1.22513 0.91325 0.94105 0.87371 0.91436 1.23069 0.96882 0.97957 0.99613 1.23310 0.98943 0.99512 0.98159 1.23287 0.86351 0.99073 0.94215 1.88543 1.28954 1.75970 1.34694 0.92675 0.86692 0.85859 0.90576 0.90807 0.91102 0.90903 0.90764 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.94 13.96 55.43 0.77 -27.16 15 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 15 3 Si 0.87 21.69 24.61 -169.99 -4.18 17.50 15 4 H -0.28 -6.54 7.01 56.52 0.40 -6.14 15 5 H -0.26 -6.34 6.54 56.52 0.37 -5.97 15 6 H -0.29 -7.30 7.11 56.52 0.40 -6.90 15 7 C -0.53 -15.49 9.01 -34.44 -0.31 -15.80 15 8 H 0.08 2.49 7.98 -52.49 -0.42 2.07 15 9 C 0.16 4.01 1.88 -68.87 -0.13 3.88 15 10 H 0.04 1.05 7.20 -51.93 -0.37 0.67 15 11 N -0.85 -18.66 8.77 -5.65 -0.05 -18.71 15 12 C 0.10 2.22 3.19 -26.01 -0.08 2.14 15 13 H 0.07 1.44 8.14 -51.93 -0.42 1.02 15 14 C -0.14 -2.32 6.18 -24.79 -0.15 -2.47 15 15 C -0.16 -2.30 7.16 -24.48 -0.18 -2.48 15 16 C 0.05 0.80 7.78 38.18 0.30 1.09 15 17 O -0.36 -8.05 10.69 -35.23 -0.38 -8.42 15 18 H 0.26 7.68 8.31 -40.82 -0.34 7.34 15 19 H 0.32 7.21 4.30 -39.29 -0.17 7.04 15 20 H 0.33 6.89 8.99 -39.29 -0.35 6.53 15 21 H 0.08 1.33 7.85 -51.93 -0.41 0.92 15 22 H 0.07 1.13 8.14 -51.93 -0.42 0.71 15 23 H 0.07 0.93 8.14 -51.93 -0.42 0.50 15 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 LS Contribution 212.83 15.07 3.21 3.21 Total: -1.00 -31.35 212.83 -4.71 -36.06 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -3.43 Total: 9.30 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -0.65 Total: -11.78 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.72 Total: -45.88 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.38 Total: -8.42 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.18 Total: 17.50 kcal Total LS contribution 3.21 Total: 3.21 kcal Total: -31.35 -4.71 -36.06 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260587197.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.862 kcal (2) G-P(sol) polarization free energy of solvation -31.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds