Wall clock time and date at job start Mon Mar 30 2020 02:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 11 11 N 1.46900 * 109.47676 * 59.99745 * 9 7 2 12 12 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 13 13 H 1.09007 * 109.82265 * 300.56568 * 12 9 7 14 14 C 1.54382 * 109.83350 * 179.58536 * 12 9 7 15 15 C 1.55304 * 102.25163 * 219.12421 * 14 12 9 16 16 C 1.54943 * 100.94172 * 34.13418 * 15 14 12 17 17 O 1.43236 * 109.83506 * 61.44468 * 12 9 7 18 18 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 19 19 H 1.00902 * 110.99636 * 296.04575 * 11 9 7 20 20 H 1.00899 * 110.99700 * 59.99648 * 11 9 7 21 21 H 1.09004 * 110.84396 * 337.31931 * 14 12 9 22 22 H 1.09000 * 110.84888 * 100.93432 * 14 12 9 23 23 H 1.08992 * 111.12761 * 276.20951 * 15 14 12 24 24 H 1.09007 * 111.11947 * 152.04751 * 15 14 12 25 25 H 1.09000 * 110.31039 * 204.63771 * 16 15 14 26 26 H 1.08998 * 110.31238 * 82.46656 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8752 -0.6797 -0.8895 11 7 4.0008 -0.5023 1.2001 12 6 4.0215 -2.6366 -0.0014 13 1 3.6528 -3.1599 0.8809 14 6 5.5653 -2.6463 -0.0113 15 6 5.8813 -3.8270 -0.9695 16 6 4.7074 -3.7126 -1.9743 17 8 3.5768 -3.3082 -1.1858 18 1 -0.4850 0.8401 0.0004 19 1 3.7314 0.4700 1.1920 20 1 3.6770 -0.9604 2.0387 21 1 5.9566 -1.7094 -0.4078 22 1 5.9584 -2.8407 0.9866 23 1 5.8546 -4.7798 -0.4410 24 1 6.8401 -3.6828 -1.4675 25 1 4.5156 -4.6775 -2.4436 26 1 4.9292 -2.9603 -2.7312 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260587197.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:56 Heat of formation + Delta-G solvation = -73.271299 kcal Electronic energy + Delta-G solvation = -10335.595832 eV Core-core repulsion = 8412.999819 eV Total energy + Delta-G solvation = -1922.596013 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.33158 -36.56801 -33.93312 -32.76402 -29.90994 -27.90561 -24.41054 -22.42386 -21.35765 -19.10708 -17.69695 -17.25038 -16.65729 -15.99858 -15.17498 -14.63080 -14.49544 -13.95077 -13.68971 -13.35876 -12.80248 -12.45867 -12.15188 -12.01131 -11.73312 -11.58802 -11.42787 -10.89573 -10.25759 -9.43507 -8.37663 -6.43952 1.21571 1.30621 1.40368 2.22117 2.88791 3.14332 3.78614 3.95589 4.08457 4.22216 4.34302 4.50786 4.84915 4.90522 4.92005 4.98117 5.13024 5.24609 5.43917 5.52530 6.04651 6.27769 6.43385 6.65190 6.72383 7.21093 8.80052 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.067758 B = 0.016021 C = 0.014387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.136692 B = 1747.296759 C = 1945.793394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.005 3.995 3 Si 0.947 3.053 4 H -0.251 1.251 5 H -0.249 1.249 6 H -0.293 1.293 7 C -0.544 4.544 8 H 0.025 0.975 9 C 0.171 3.829 10 H 0.029 0.971 11 N -0.829 5.829 12 C 0.100 3.900 13 H 0.057 0.943 14 C -0.129 4.129 15 C -0.145 4.145 16 C 0.033 3.967 17 O -0.406 6.406 18 H 0.267 0.733 19 H 0.316 0.684 20 H 0.338 0.662 21 H 0.072 0.928 22 H 0.093 0.907 23 H 0.086 0.914 24 H 0.105 0.895 25 H 0.095 0.905 26 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.163 -3.207 -0.316 13.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.193 4.193 3 Si 0.771 3.229 4 H -0.176 1.176 5 H -0.173 1.173 6 H -0.220 1.220 7 C -0.584 4.584 8 H 0.043 0.957 9 C 0.061 3.939 10 H 0.047 0.953 11 N -0.363 5.363 12 C 0.042 3.958 13 H 0.075 0.925 14 C -0.167 4.167 15 C -0.183 4.183 16 C -0.043 4.043 17 O -0.325 6.325 18 H 0.076 0.924 19 H 0.131 0.869 20 H 0.150 0.850 21 H 0.091 0.909 22 H 0.112 0.888 23 H 0.104 0.896 24 H 0.124 0.876 25 H 0.113 0.887 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.541 -3.338 -0.655 13.962 hybrid contribution -1.423 0.936 0.118 1.707 sum 12.119 -2.402 -0.537 12.366 Atomic orbital electron populations 1.70088 1.08309 1.28151 1.52073 1.26049 0.95716 1.03418 0.94081 0.85837 0.78924 0.78313 0.79792 1.17551 1.17340 1.22030 1.22010 0.93083 0.92957 1.50366 0.95666 1.19615 0.91041 0.92872 0.90378 0.95330 1.59541 1.65812 1.05386 1.05515 1.22472 0.94546 0.91713 0.87057 0.92548 1.22997 0.92993 0.99136 1.01561 1.23280 0.99166 0.99020 0.96788 1.23629 0.86084 1.00090 0.94468 1.88501 1.32274 1.76193 1.35507 0.92436 0.86869 0.84976 0.90898 0.88842 0.89582 0.87634 0.88655 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.68 13.96 21.45 0.30 -60.38 15 2 C 0.01 0.30 5.47 84.66 0.46 0.76 15 3 Si 0.95 44.43 24.61 68.60 1.69 46.12 15 4 H -0.25 -10.67 7.01 99.48 0.70 -9.97 15 5 H -0.25 -11.13 6.54 99.48 0.65 -10.48 15 6 H -0.29 -13.77 7.11 99.48 0.71 -13.06 15 7 C -0.54 -32.48 9.01 25.60 0.23 -32.25 15 8 H 0.02 1.71 7.98 -2.91 -0.02 1.69 15 9 C 0.17 8.27 1.88 44.17 0.08 8.35 15 10 H 0.03 1.46 7.20 -2.38 -0.02 1.44 15 11 N -0.83 -34.79 8.77 -171.80 -1.51 -36.30 15 12 C 0.10 4.19 3.19 31.06 0.10 4.29 15 13 H 0.06 2.43 8.14 -2.38 -0.02 2.41 15 14 C -0.13 -3.98 6.18 31.85 0.20 -3.78 15 15 C -0.15 -3.59 7.16 32.05 0.23 -3.36 15 16 C 0.03 1.05 7.78 72.65 0.56 1.61 15 17 O -0.41 -18.04 10.69 -148.98 -1.59 -19.63 15 18 H 0.27 15.90 8.31 -92.71 -0.77 15.12 15 19 H 0.32 13.44 4.30 -89.69 -0.39 13.05 15 20 H 0.34 13.54 8.99 -89.70 -0.81 12.73 15 21 H 0.07 2.30 7.85 -2.38 -0.02 2.29 15 22 H 0.09 2.51 8.14 -2.39 -0.02 2.49 15 23 H 0.09 1.90 8.14 -2.39 -0.02 1.88 15 24 H 0.11 1.98 8.14 -2.38 -0.02 1.96 15 25 H 0.10 2.53 8.14 -2.39 -0.02 2.51 15 26 H 0.05 1.64 8.14 -2.39 -0.02 1.62 15 Total: -1.00 -69.56 212.83 0.67 -68.89 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: -0.08 Total: 25.67 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: 1.87 Total: -24.37 kcal Atomic # 7 Polarization: -95.47 SS G_CDS: -1.21 Total: -96.68 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -1.59 Total: -19.63 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.69 Total: 46.12 kcal Total: -69.56 0.67 -68.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260587197.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.385 kcal (2) G-P(sol) polarization free energy of solvation -69.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds