Wall clock time and date at job start Mon Mar 30 2020 01:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00267 * 2 1 4 4 H 1.48500 * 109.46926 * 269.99889 * 3 2 1 5 5 H 1.48497 * 109.47180 * 29.99730 * 3 2 1 6 6 H 1.48495 * 109.46965 * 149.99802 * 3 2 1 7 7 C 1.37880 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00393 * 173.19477 * 7 2 1 9 9 C 1.50710 * 119.99888 * 353.19579 * 7 2 1 10 10 C 1.53000 * 110.26872 * 301.83247 * 9 7 2 11 11 N 1.46901 * 109.47572 * 307.25456 * 10 9 7 12 12 C 1.54594 * 110.31091 * 63.91878 * 9 7 2 13 13 C 1.54938 * 102.91908 * 97.05866 * 12 9 7 14 14 N 1.48531 * 103.22517 * 37.41414 * 13 12 9 15 15 C 1.47898 * 105.82195 * 320.79042 * 14 13 12 16 16 H 0.97003 * 119.99794 * 0.02562 * 1 2 3 17 17 H 1.09003 * 109.47163 * 187.25704 * 10 9 7 18 18 H 1.09000 * 109.47504 * 67.25749 * 10 9 7 19 19 H 1.00896 * 111.00614 * 174.55859 * 11 10 9 20 20 H 1.00899 * 110.99921 * 298.52144 * 11 10 9 21 21 H 1.08992 * 110.72398 * 215.42076 * 12 9 7 22 22 H 1.09007 * 110.72132 * 338.70132 * 12 9 7 23 23 H 1.09000 * 110.66748 * 155.85099 * 13 12 9 24 24 H 1.09007 * 110.66589 * 278.98045 * 13 12 9 25 25 H 1.00905 * 110.99989 * 200.27606 * 14 13 12 26 26 H 1.08998 * 109.91850 * 265.97676 * 15 14 13 27 27 H 1.09006 * 109.91750 * 144.68006 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0787 -1.1975 -0.1103 9 6 1.2589 -2.4946 0.1558 10 6 0.4685 -2.4993 1.4658 11 7 1.3656 -2.1658 2.5802 12 6 0.3097 -2.7155 -1.0443 13 6 1.1353 -3.6407 -1.9732 14 7 1.8396 -4.5372 -1.0211 15 6 2.2382 -3.6823 0.1180 16 1 -0.4850 0.8401 -0.0004 17 1 0.0398 -3.4883 1.6279 18 1 -0.3317 -1.7612 1.4101 19 1 0.8515 -2.0754 3.4437 20 1 2.1027 -2.8492 2.6680 21 1 -0.6078 -3.2093 -0.7246 22 1 0.0878 -1.7702 -1.5397 23 1 0.4786 -4.2141 -2.6275 24 1 1.8507 -3.0609 -2.5566 25 1 2.6460 -4.9623 -1.4537 26 1 3.2558 -3.3201 -0.0278 27 1 2.1720 -4.2477 1.0476 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260612306.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:27 Heat of formation + Delta-G solvation = 2.326302 kcal Electronic energy + Delta-G solvation = -10463.739371 eV Core-core repulsion = 8642.140178 eV Total energy + Delta-G solvation = -1821.599193 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.85875 -33.56885 -31.90731 -28.83815 -27.74432 -24.49081 -22.81477 -20.27692 -18.53968 -16.26098 -15.29216 -14.78090 -14.22665 -13.61713 -13.23730 -12.64631 -12.15405 -11.77797 -11.24117 -10.83575 -10.67244 -10.43750 -10.23843 -10.07864 -9.62237 -9.13542 -8.82767 -8.15560 -7.70551 -7.33931 -5.85942 -3.86727 3.38738 3.45899 3.51430 4.56205 5.21979 5.45624 5.78435 6.00934 6.17093 6.33625 6.40598 6.58631 6.67151 6.87019 7.04163 7.16739 7.34488 7.63781 7.73365 7.83388 8.08956 8.15709 8.35565 8.57751 8.68111 9.06873 9.75217 11.20390 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.048713 B = 0.020214 C = 0.017753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.661990 B = 1384.814119 C = 1576.855575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.073 3.927 3 Si 0.888 3.112 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.475 4.475 8 H 0.048 0.952 9 C 0.070 3.930 10 C 0.085 3.915 11 N -0.825 5.825 12 C -0.097 4.097 13 C 0.039 3.961 14 N -0.681 5.681 15 C 0.048 3.952 16 H 0.256 0.744 17 H -0.019 1.019 18 H 0.091 0.909 19 H 0.315 0.685 20 H 0.318 0.682 21 H 0.036 0.964 22 H 0.086 0.914 23 H 0.057 0.943 24 H 0.034 0.966 25 H 0.317 0.683 26 H 0.032 0.968 27 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.590 -4.369 0.006 4.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.128 4.128 3 Si 0.717 3.283 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.513 4.513 8 H 0.066 0.934 9 C 0.069 3.931 10 C -0.046 4.046 11 N -0.352 5.352 12 C -0.136 4.136 13 C -0.090 4.090 14 N -0.308 5.308 15 C -0.081 4.081 16 H 0.066 0.934 17 H -0.001 1.001 18 H 0.109 0.891 19 H 0.125 0.875 20 H 0.130 0.870 21 H 0.055 0.945 22 H 0.105 0.895 23 H 0.076 0.924 24 H 0.052 0.948 25 H 0.130 0.870 26 H 0.050 0.950 27 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.993 -3.867 -0.092 3.994 hybrid contribution 0.946 0.543 0.096 1.095 sum 1.939 -3.325 0.004 3.849 Atomic orbital electron populations 1.69880 1.05770 1.25945 1.51424 1.24755 0.94654 0.98478 0.94896 0.86669 0.80122 0.84081 0.77378 1.21439 1.21501 1.20142 1.20812 0.92446 0.89786 1.48300 0.93374 1.18932 0.91271 0.91891 0.90982 1.21834 0.95880 0.95414 0.91471 1.58573 1.15457 1.54937 1.06205 1.22441 0.96161 0.97987 0.97005 1.23016 0.97054 0.93944 0.95032 1.63130 1.27417 1.30860 1.09414 1.22885 0.98513 0.94129 0.92578 0.93419 1.00109 0.89083 0.87523 0.87044 0.94528 0.89504 0.92421 0.94783 0.86992 0.95001 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.79 10.12 55.43 0.56 -24.23 15 2 C 0.07 1.98 4.98 -17.82 -0.09 1.90 15 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 15 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 5 H -0.29 -7.12 7.11 56.52 0.40 -6.71 15 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 7 C -0.48 -12.81 7.42 -34.43 -0.26 -13.06 15 8 H 0.05 1.33 7.36 -52.49 -0.39 0.94 15 9 C 0.07 1.71 0.43 -154.30 -0.07 1.65 15 10 C 0.08 2.01 5.11 -3.82 -0.02 1.99 15 11 N -0.83 -17.73 8.99 -10.37 -0.09 -17.82 15 12 C -0.10 -2.30 5.66 -24.87 -0.14 -2.44 15 13 C 0.04 0.79 7.55 -1.90 -0.01 0.78 15 14 N -0.68 -13.51 7.51 -110.09 -0.83 -14.34 15 15 C 0.05 1.04 6.46 -2.76 -0.02 1.02 15 16 H 0.26 6.94 8.31 -40.82 -0.34 6.60 15 17 H -0.02 -0.44 8.13 -51.93 -0.42 -0.86 15 18 H 0.09 2.41 6.49 -51.93 -0.34 2.07 15 19 H 0.31 5.95 9.08 -39.29 -0.36 5.59 15 20 H 0.32 6.27 7.98 -39.29 -0.31 5.96 15 21 H 0.04 0.86 7.86 -51.93 -0.41 0.45 15 22 H 0.09 2.27 6.52 -51.92 -0.34 1.94 15 23 H 0.06 1.07 8.14 -51.93 -0.42 0.64 15 24 H 0.03 0.70 8.14 -51.92 -0.42 0.28 15 25 H 0.32 5.46 8.92 -39.29 -0.35 5.11 15 26 H 0.03 0.70 7.39 -51.93 -0.38 0.31 15 27 H 0.05 1.01 7.01 -51.93 -0.36 0.64 15 LS Contribution 216.44 15.07 3.26 3.26 Total: -1.00 -28.22 216.44 -6.36 -34.59 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -3.64 Total: 9.95 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -0.60 Total: -8.18 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.36 Total: -56.39 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -28.22 -6.36 -34.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260612306.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.914 kcal (2) G-P(sol) polarization free energy of solvation -28.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds