Wall clock time and date at job start Mon Mar 30 2020 02:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99599 * 2 1 4 4 H 1.48498 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46871 * 300.00169 * 3 2 1 6 6 H 1.48502 * 109.46812 * 60.00033 * 3 2 1 7 7 C 1.37869 * 120.00531 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00346 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00280 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46407 * 300.00202 * 9 7 2 11 11 O 1.42904 * 109.46889 * 59.99803 * 9 7 2 12 12 N 1.46300 * 113.99913 * 240.89424 * 11 9 7 13 13 C 1.52990 * 109.47603 * 179.97438 * 9 7 2 14 14 C 1.53788 * 113.61527 * 277.51697 * 13 9 7 15 15 C 1.53959 * 87.01889 * 220.04714 * 14 13 9 16 16 C 1.53780 * 113.61741 * 179.90729 * 13 9 7 17 17 H 0.96998 * 120.00710 * 359.97438 * 1 2 3 18 18 H 1.00900 * 111.00092 * 173.82094 * 12 11 9 19 19 H 1.00908 * 110.99804 * 297.77079 * 12 11 9 20 20 H 1.09002 * 112.85229 * 48.71044 * 13 9 7 21 21 H 1.08999 * 113.61074 * 334.56313 * 14 13 9 22 22 H 1.08996 * 113.61233 * 105.47209 * 14 13 9 23 23 H 1.09002 * 113.53265 * 270.80703 * 15 14 13 24 24 H 1.08992 * 113.73999 * 139.94366 * 15 14 13 25 25 H 1.08999 * 113.61518 * 254.52837 * 16 13 9 26 26 H 1.09000 * 113.61320 * 25.43236 * 16 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 1 0.6243 -2.5574 0.8880 11 8 0.4301 -2.5741 -1.1689 12 7 -1.0005 -2.6853 -0.8838 13 6 2.2455 -3.6619 -0.0027 14 6 2.7860 -4.0091 -1.4000 15 6 2.6664 -5.4884 -0.9906 16 6 1.5750 -5.0458 -0.0017 17 1 -0.4851 0.8400 0.0004 18 1 -1.5435 -2.6338 -1.7327 19 1 -1.2031 -3.5334 -0.3759 20 1 3.0244 -3.5536 0.7521 21 1 2.1150 -3.7249 -2.2107 22 1 3.8127 -3.6824 -1.5646 23 1 3.5613 -5.8798 -0.5068 24 1 2.2980 -6.1356 -1.7865 25 1 1.6255 -5.5548 0.9608 26 1 0.5724 -5.0456 -0.4294 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260647819.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:21 Heat of formation + Delta-G solvation = 16.697532 kcal Electronic energy + Delta-G solvation = -10341.005286 eV Core-core repulsion = 8422.310615 eV Total energy + Delta-G solvation = -1918.694671 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.19228 -34.61635 -32.21382 -29.11435 -26.77127 -24.94072 -24.26961 -20.87848 -18.39563 -16.46791 -15.29030 -14.72891 -14.55404 -14.41652 -13.77005 -12.50773 -11.86324 -11.74670 -11.56675 -11.16366 -10.85825 -10.60099 -10.30989 -10.09695 -9.70069 -9.58517 -8.96697 -8.46225 -8.29141 -7.19272 -5.78436 -3.94384 3.37486 3.45478 3.49178 4.45855 4.58681 5.36170 5.43739 5.49929 5.53307 5.77598 6.13924 6.38124 6.39609 6.51395 6.67932 6.73216 6.94437 7.20251 7.38163 7.49106 8.03598 8.18965 8.45759 8.92695 9.09393 9.73344 11.22551 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.058126 B = 0.016554 C = 0.013887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.597038 B = 1691.014725 C = 2015.770899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.076 3.924 3 Si 0.882 3.118 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.538 4.538 8 H 0.056 0.944 9 C 0.224 3.776 10 H 0.031 0.969 11 O -0.229 6.229 12 N -0.662 5.662 13 C -0.113 4.113 14 C -0.121 4.121 15 C -0.146 4.146 16 C -0.140 4.140 17 H 0.255 0.745 18 H 0.335 0.665 19 H 0.304 0.696 20 H 0.082 0.918 21 H 0.084 0.916 22 H 0.053 0.947 23 H 0.069 0.931 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.477 -7.046 -0.960 7.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.131 4.131 3 Si 0.710 3.290 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.576 4.576 8 H 0.075 0.925 9 C 0.168 3.832 10 H 0.049 0.951 11 O -0.244 6.244 12 N -0.224 5.224 13 C -0.132 4.132 14 C -0.158 4.158 15 C -0.183 4.183 16 C -0.177 4.177 17 H 0.065 0.935 18 H 0.145 0.855 19 H 0.113 0.887 20 H 0.101 0.899 21 H 0.103 0.897 22 H 0.071 0.929 23 H 0.087 0.913 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.472 -6.259 -0.739 6.472 hybrid contribution 0.384 0.022 -0.452 0.594 sum 1.856 -6.236 -1.191 6.615 Atomic orbital electron populations 1.70176 1.05340 1.25487 1.45984 1.25080 0.94789 0.98765 0.94435 0.86724 0.80337 0.84535 0.77394 1.19896 1.21144 1.21147 1.21270 0.92728 0.90518 1.53096 0.92539 1.19462 0.86937 0.90784 0.86063 0.95114 1.90638 1.06698 1.95612 1.31443 1.64382 0.94040 1.39681 1.24271 1.22991 0.99020 0.94401 0.96820 1.22736 1.00418 0.93759 0.98903 1.22874 0.98844 0.97537 0.99081 1.22916 0.98053 0.98535 0.98242 0.93531 0.85495 0.88747 0.89934 0.89743 0.92867 0.91261 0.92798 0.92861 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.75 12.42 55.43 0.69 -24.06 15 2 C 0.08 2.20 5.40 -17.82 -0.10 2.10 15 3 Si 0.88 21.83 29.54 -169.99 -5.02 16.80 15 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 15 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 15 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 7 C -0.54 -15.36 8.78 -34.44 -0.30 -15.66 15 8 H 0.06 1.59 7.74 -52.48 -0.41 1.19 15 9 C 0.22 5.80 2.38 -27.89 -0.07 5.73 15 10 H 0.03 0.87 7.88 -51.93 -0.41 0.46 15 11 O -0.23 -5.89 9.14 -13.92 -0.13 -6.02 15 12 N -0.66 -14.89 10.14 60.35 0.61 -14.28 15 13 C -0.11 -2.42 3.51 -89.81 -0.32 -2.73 15 14 C -0.12 -2.37 7.49 -25.82 -0.19 -2.57 15 15 C -0.15 -2.39 8.09 -25.82 -0.21 -2.60 15 16 C -0.14 -2.51 7.54 -25.92 -0.20 -2.71 15 17 H 0.25 7.22 8.31 -40.82 -0.34 6.88 15 18 H 0.33 6.66 9.25 -39.29 -0.36 6.30 15 19 H 0.30 5.96 8.99 -39.29 -0.35 5.61 15 20 H 0.08 1.74 8.14 -51.93 -0.42 1.31 15 21 H 0.08 1.80 6.98 -51.93 -0.36 1.44 15 22 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 23 H 0.07 1.03 8.14 -51.93 -0.42 0.60 15 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 15 26 H 0.07 1.29 7.52 -51.93 -0.39 0.90 15 LS Contribution 223.16 15.07 3.36 3.36 Total: -1.00 -30.62 223.16 -5.40 -36.02 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -3.53 Total: 6.60 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -1.38 Total: -18.44 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 1.30 Total: -38.33 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.13 Total: -6.02 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -30.62 -5.40 -36.02 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260647819.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.718 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds