Wall clock time and date at job start Mon Mar 30 2020 02:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99599 * 2 1 4 4 H 1.48498 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46871 * 300.00169 * 3 2 1 6 6 H 1.48502 * 109.46812 * 60.00033 * 3 2 1 7 7 C 1.37869 * 120.00531 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00346 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00280 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46407 * 300.00202 * 9 7 2 11 11 O 1.42904 * 109.46889 * 59.99803 * 9 7 2 12 12 N 1.46300 * 113.99913 * 240.89424 * 11 9 7 13 13 C 1.52990 * 109.47603 * 179.97438 * 9 7 2 14 14 C 1.53788 * 113.61527 * 277.51697 * 13 9 7 15 15 C 1.53959 * 87.01889 * 220.04714 * 14 13 9 16 16 C 1.53780 * 113.61741 * 179.90729 * 13 9 7 17 17 H 0.96998 * 120.00710 * 359.97438 * 1 2 3 18 18 H 1.00900 * 111.00092 * 173.82094 * 12 11 9 19 19 H 1.00908 * 110.99804 * 297.77079 * 12 11 9 20 20 H 1.09002 * 112.85229 * 48.71044 * 13 9 7 21 21 H 1.08999 * 113.61074 * 334.56313 * 14 13 9 22 22 H 1.08996 * 113.61233 * 105.47209 * 14 13 9 23 23 H 1.09002 * 113.53265 * 270.80703 * 15 14 13 24 24 H 1.08992 * 113.73999 * 139.94366 * 15 14 13 25 25 H 1.08999 * 113.61518 * 254.52837 * 16 13 9 26 26 H 1.09000 * 113.61320 * 25.43236 * 16 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 1 0.6243 -2.5574 0.8880 11 8 0.4301 -2.5741 -1.1689 12 7 -1.0005 -2.6853 -0.8838 13 6 2.2455 -3.6619 -0.0027 14 6 2.7860 -4.0091 -1.4000 15 6 2.6664 -5.4884 -0.9906 16 6 1.5750 -5.0458 -0.0017 17 1 -0.4851 0.8400 0.0004 18 1 -1.5435 -2.6338 -1.7327 19 1 -1.2031 -3.5334 -0.3759 20 1 3.0244 -3.5536 0.7521 21 1 2.1150 -3.7249 -2.2107 22 1 3.8127 -3.6824 -1.5646 23 1 3.5613 -5.8798 -0.5068 24 1 2.2980 -6.1356 -1.7865 25 1 1.6255 -5.5548 0.9608 26 1 0.5724 -5.0456 -0.4294 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260647819.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:20 Heat of formation + Delta-G solvation = -4.131753 kcal Electronic energy + Delta-G solvation = -10341.908512 eV Core-core repulsion = 8422.310615 eV Total energy + Delta-G solvation = -1919.597897 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.79515 -36.48341 -34.34803 -31.02034 -28.69228 -26.53185 -26.06319 -22.66036 -19.99162 -18.57023 -17.12780 -16.64517 -16.38333 -16.05923 -15.54901 -14.45273 -13.58425 -13.37054 -13.15124 -13.04089 -12.79155 -12.35390 -12.23969 -11.98553 -11.31858 -11.15605 -10.82943 -10.42970 -10.31377 -9.07302 -7.95206 -6.18350 1.41559 1.43463 1.54461 2.45506 2.63800 3.36325 3.93104 3.97971 4.05056 4.20979 4.77208 4.82668 4.96637 5.02231 5.11743 5.17707 5.33257 5.40780 5.54191 5.78147 5.89310 6.34424 6.55142 6.86329 7.04839 7.52834 9.04647 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.058126 B = 0.016554 C = 0.013887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.597038 B = 1691.014725 C = 2015.770899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.025 3.975 3 Si 0.949 3.051 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.278 1.278 7 C -0.563 4.563 8 H 0.051 0.949 9 C 0.227 3.773 10 H -0.001 1.001 11 O -0.247 6.247 12 N -0.669 5.669 13 C -0.125 4.125 14 C -0.125 4.125 15 C -0.123 4.123 16 C -0.132 4.132 17 H 0.255 0.745 18 H 0.348 0.652 19 H 0.322 0.678 20 H 0.082 0.918 21 H 0.063 0.937 22 H 0.055 0.945 23 H 0.092 0.908 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.185 -7.820 -1.087 8.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.179 4.179 3 Si 0.775 3.225 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.204 1.204 7 C -0.601 4.601 8 H 0.070 0.930 9 C 0.170 3.830 10 H 0.017 0.983 11 O -0.261 6.261 12 N -0.234 5.234 13 C -0.144 4.144 14 C -0.162 4.162 15 C -0.160 4.160 16 C -0.170 4.170 17 H 0.064 0.936 18 H 0.160 0.840 19 H 0.132 0.868 20 H 0.100 0.900 21 H 0.082 0.918 22 H 0.074 0.926 23 H 0.111 0.889 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.185 -7.044 -0.868 7.426 hybrid contribution 0.106 0.255 -0.403 0.488 sum 2.291 -6.789 -1.271 7.277 Atomic orbital electron populations 1.70300 1.06585 1.26210 1.46860 1.25846 0.95754 1.02165 0.94158 0.85681 0.79159 0.80245 0.77452 1.19368 1.20988 1.20390 1.21679 0.92842 0.92339 1.53248 0.93037 1.19313 0.87151 0.91810 0.84695 0.98344 1.90556 1.08316 1.95890 1.31383 1.64213 0.92412 1.41272 1.25489 1.22967 0.98612 0.94672 0.98177 1.22694 0.99852 0.96660 0.97022 1.22784 0.99010 0.95370 0.98845 1.22857 0.98131 0.96142 0.99861 0.93614 0.83956 0.86805 0.89980 0.91844 0.92586 0.88922 0.90860 0.90920 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -51.66 12.42 21.44 0.27 -51.40 15 2 C 0.02 1.44 5.40 84.65 0.46 1.90 15 3 Si 0.95 45.11 29.54 68.60 2.03 47.14 15 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 15 5 H -0.28 -13.34 7.11 99.48 0.71 -12.63 15 6 H -0.28 -12.81 7.11 99.48 0.71 -12.10 15 7 C -0.56 -32.51 8.78 25.60 0.22 -32.29 15 8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 15 9 C 0.23 11.88 2.38 29.85 0.07 11.95 15 10 H 0.00 -0.06 7.88 -2.39 -0.02 -0.08 15 11 O -0.25 -12.78 9.14 -50.16 -0.46 -13.24 15 12 N -0.67 -29.99 10.14 37.02 0.38 -29.61 15 13 C -0.13 -5.26 3.51 -10.27 -0.04 -5.29 15 14 C -0.12 -4.74 7.49 31.18 0.23 -4.50 15 15 C -0.12 -3.62 8.09 31.18 0.25 -3.37 15 16 C -0.13 -4.46 7.54 31.12 0.23 -4.23 15 17 H 0.25 14.53 8.31 -92.71 -0.77 13.76 15 18 H 0.35 13.70 9.25 -89.69 -0.83 12.87 15 19 H 0.32 12.48 8.99 -89.69 -0.81 11.67 15 20 H 0.08 3.40 8.14 -2.39 -0.02 3.38 15 21 H 0.06 2.67 6.98 -2.39 -0.02 2.65 15 22 H 0.06 2.05 8.14 -2.39 -0.02 2.03 15 23 H 0.09 2.34 8.14 -2.39 -0.02 2.32 15 24 H 0.07 1.91 8.14 -2.39 -0.02 1.89 15 25 H 0.07 2.16 8.14 -2.39 -0.02 2.14 15 26 H 0.06 2.25 7.52 -2.39 -0.02 2.23 15 Total: -1.00 -64.81 223.16 3.19 -61.62 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -0.46 Total: 21.31 kcal Atomic # 6 Polarization: -37.26 SS G_CDS: 1.44 Total: -35.83 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: 0.64 Total: -81.01 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.46 Total: -13.24 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -64.81 3.19 -61.62 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260647819.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.488 kcal (2) G-P(sol) polarization free energy of solvation -64.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds