Wall clock time and date at job start Mon Mar 30 2020 01:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30965 * 1 3 3 Si 1.86799 * 120.00025 * 2 1 4 4 H 1.48506 * 109.47296 * 274.98210 * 3 2 1 5 5 H 1.48497 * 109.47484 * 34.98245 * 3 2 1 6 6 H 1.48502 * 109.47078 * 154.98874 * 3 2 1 7 7 C 1.39951 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99690 * 186.45008 * 7 2 1 9 9 C 1.39938 * 120.00045 * 6.45421 * 7 2 1 10 10 C 1.38577 * 126.19859 * 173.52666 * 9 7 2 11 11 N 1.30690 * 113.61263 * 179.97438 * 10 9 7 12 12 C 1.30171 * 117.46721 * 359.97438 * 11 10 9 13 13 O 1.35204 * 124.59076 * 179.97438 * 12 11 10 14 14 S 1.70882 * 110.82227 * 0.02562 * 12 11 10 15 15 H 0.97004 * 120.00285 * 0.02562 * 1 2 3 16 16 H 1.08005 * 123.19877 * 0.24548 * 10 9 7 17 17 H 0.96707 * 113.99928 * 89.97841 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2436 1.6177 0.0000 4 1 2.3859 2.1073 -1.3948 5 1 1.4978 2.6200 0.8027 6 1 3.5900 1.4120 0.5920 7 6 2.0094 -1.2120 0.0005 8 1 3.0843 -1.2149 0.1056 9 6 1.3163 -2.4201 -0.1351 10 6 1.8825 -3.6770 -0.2771 11 7 1.0034 -4.6381 -0.3843 12 6 -0.2551 -4.3077 -0.3453 13 8 -1.2816 -5.1822 -0.4431 14 16 -0.4342 -2.6190 -0.1554 15 1 -0.4851 0.8401 -0.0004 16 1 2.9490 -3.8468 -0.2930 17 1 -1.5789 -5.5363 0.4063 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260691921.mol2 17 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:13 Heat of formation + Delta-G solvation = -23.247785 kcal Electronic energy + Delta-G solvation = -7692.601353 eV Core-core repulsion = 5943.261205 eV Total energy + Delta-G solvation = -1749.340148 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 171.009 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -37.68397 -35.70465 -34.08585 -29.35694 -25.04039 -22.74576 -19.21145 -18.47590 -16.59384 -15.70616 -15.09639 -13.97796 -13.16923 -12.68943 -12.07520 -11.98477 -11.40773 -11.24458 -10.76273 -10.17294 -9.85353 -9.42816 -7.89438 -7.83435 -7.27297 -7.07226 -4.67269 2.35769 2.85320 2.91887 2.95546 3.20479 3.57796 3.87419 4.11163 4.90656 5.50734 6.65821 6.72330 7.06059 7.53662 7.78888 8.10608 8.24704 8.70316 9.62609 9.67337 Molecular weight = 171.01amu Principal moments of inertia in cm(-1) A = 0.108997 B = 0.016125 C = 0.014146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 256.825022 B = 1736.043465 C = 1978.861090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.047 3.953 3 Si 0.941 3.059 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.365 4.365 8 H 0.102 0.898 9 C -0.002 4.002 10 C -0.160 4.160 11 N -0.450 5.450 12 C -0.028 4.028 13 O -0.453 6.453 14 S 0.133 5.867 15 H 0.299 0.701 16 H 0.143 0.857 17 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.212 3.945 1.752 4.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.175 4.175 3 Si 0.764 3.236 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.180 1.180 7 C -0.402 4.402 8 H 0.120 0.880 9 C -0.126 4.126 10 C -0.315 4.315 11 N -0.172 5.172 12 C -0.334 4.334 13 O -0.254 6.254 14 S 0.378 5.622 15 H 0.112 0.888 16 H 0.160 0.840 17 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -0.856 4.080 1.126 4.318 hybrid contribution 1.171 0.298 0.460 1.293 sum 0.314 4.378 1.586 4.667 Atomic orbital electron populations 1.69043 1.07730 1.31011 1.31882 1.26295 0.95244 1.02966 0.93031 0.85710 0.80087 0.78260 0.79573 1.18891 1.19611 1.17978 1.19201 0.96064 0.88563 1.36417 0.87971 1.23264 0.94053 0.97304 0.97956 1.21140 0.97419 0.86810 1.26099 1.65271 1.01477 1.39160 1.11259 1.24113 0.87563 0.93998 1.27712 1.84806 1.46715 1.61086 1.32837 1.84193 1.06260 0.99113 1.72640 0.88802 0.83984 0.79441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.21 10.79 55.55 0.60 -17.61 13 2 C 0.05 1.07 5.49 -17.28 -0.09 0.97 13 3 Si 0.94 16.78 29.57 -169.99 -5.03 11.76 13 4 H -0.26 -4.69 7.11 56.52 0.40 -4.29 13 5 H -0.27 -4.71 7.11 56.52 0.40 -4.31 13 6 H -0.26 -4.47 7.11 56.52 0.40 -4.07 13 7 C -0.37 -9.03 9.31 -38.30 -0.36 -9.39 13 8 H 0.10 2.33 7.85 -52.48 -0.41 1.92 13 9 C 0.00 -0.05 6.23 -38.82 -0.24 -0.30 13 10 C -0.16 -4.31 11.45 -17.91 -0.21 -4.52 13 11 N -0.45 -12.61 10.52 -15.01 -0.16 -12.77 13 12 C -0.03 -0.76 8.59 52.06 0.45 -0.31 13 13 O -0.45 -10.78 13.62 -17.31 -0.24 -11.02 13 14 S 0.13 3.45 20.30 -107.50 -2.18 1.26 13 15 H 0.30 6.28 8.30 -40.82 -0.34 5.95 13 16 H 0.14 3.50 8.06 -52.48 -0.42 3.08 13 17 H 0.35 6.57 9.06 45.56 0.41 6.98 13 LS Contribution 180.46 15.07 2.72 2.72 Total: -1.00 -29.64 180.46 -4.29 -33.93 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: 0.44 Total: 5.26 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -0.45 Total: -13.54 kcal Atomic # 7 Polarization: -30.82 SS G_CDS: 0.44 Total: -30.38 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: -0.24 Total: -11.02 kcal Atomic # 14 Polarization: 16.78 SS G_CDS: -5.03 Total: 11.76 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -2.18 Total: 1.26 kcal Total LS contribution 2.72 Total: 2.72 kcal Total: -29.64 -4.29 -33.93 kcal The number of atoms in the molecule is 17 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260691921.mol2 17 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.685 kcal (2) G-P(sol) polarization free energy of solvation -29.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds