Wall clock time and date at job start Mon Mar 30 2020 01:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30965 * 1 3 3 Si 1.86799 * 120.00025 * 2 1 4 4 H 1.48506 * 109.47296 * 274.98210 * 3 2 1 5 5 H 1.48497 * 109.47484 * 34.98245 * 3 2 1 6 6 H 1.48502 * 109.47078 * 154.98874 * 3 2 1 7 7 C 1.39951 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99690 * 186.45008 * 7 2 1 9 9 C 1.39938 * 120.00045 * 6.45421 * 7 2 1 10 10 C 1.38577 * 126.19859 * 173.52666 * 9 7 2 11 11 N 1.30690 * 113.61263 * 179.97438 * 10 9 7 12 12 C 1.30171 * 117.46721 * 359.97438 * 11 10 9 13 13 O 1.35204 * 124.59076 * 179.97438 * 12 11 10 14 14 S 1.70882 * 110.82227 * 0.02562 * 12 11 10 15 15 H 0.97004 * 120.00285 * 0.02562 * 1 2 3 16 16 H 1.08005 * 123.19877 * 0.24548 * 10 9 7 17 17 H 0.96707 * 113.99928 * 89.97841 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2436 1.6177 0.0000 4 1 2.3859 2.1073 -1.3948 5 1 1.4978 2.6200 0.8027 6 1 3.5900 1.4120 0.5920 7 6 2.0094 -1.2120 0.0005 8 1 3.0843 -1.2149 0.1056 9 6 1.3163 -2.4201 -0.1351 10 6 1.8825 -3.6770 -0.2771 11 7 1.0034 -4.6381 -0.3843 12 6 -0.2551 -4.3077 -0.3453 13 8 -1.2816 -5.1822 -0.4431 14 16 -0.4342 -2.6190 -0.1554 15 1 -0.4851 0.8401 -0.0004 16 1 2.9490 -3.8468 -0.2930 17 1 -1.5789 -5.5363 0.4063 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260691921.mol2 17 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:13 Heat of formation + Delta-G solvation = -47.051030 kcal Electronic energy + Delta-G solvation = -7693.633540 eV Core-core repulsion = 5943.261205 eV Total energy + Delta-G solvation = -1750.372335 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 171.009 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.65934 -37.60745 -35.95422 -31.31628 -26.99343 -24.71652 -21.16800 -20.39653 -18.50745 -17.61554 -16.90384 -15.76648 -14.94461 -14.66153 -13.97448 -13.71115 -13.14992 -12.98301 -12.31340 -11.89697 -11.54637 -11.41433 -9.88492 -9.82600 -9.28342 -8.91197 -6.62323 0.46975 1.22097 1.39762 1.52344 1.60355 1.80990 2.14798 2.22982 2.98320 3.61954 4.80637 4.86550 5.08761 5.61331 5.89759 6.18879 6.35063 6.91129 7.60997 7.91564 Molecular weight = 171.01amu Principal moments of inertia in cm(-1) A = 0.108997 B = 0.016125 C = 0.014146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 256.825022 B = 1736.043465 C = 1978.861090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.009 3.991 3 Si 1.022 2.978 4 H -0.259 1.259 5 H -0.260 1.260 6 H -0.247 1.247 7 C -0.372 4.372 8 H 0.119 0.881 9 C -0.028 4.028 10 C -0.190 4.190 11 N -0.470 5.470 12 C -0.052 4.052 13 O -0.458 6.458 14 S 0.126 5.874 15 H 0.314 0.686 16 H 0.155 0.845 17 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.821 5.974 1.978 6.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.212 4.212 3 Si 0.839 3.161 4 H -0.184 1.184 5 H -0.184 1.184 6 H -0.170 1.170 7 C -0.409 4.409 8 H 0.137 0.863 9 C -0.151 4.151 10 C -0.344 4.344 11 N -0.193 5.193 12 C -0.357 4.357 13 O -0.262 6.262 14 S 0.371 5.629 15 H 0.128 0.872 16 H 0.172 0.828 17 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -0.281 6.060 1.363 6.218 hybrid contribution 0.944 -0.226 0.414 1.055 sum 0.663 5.834 1.777 6.135 Atomic orbital electron populations 1.69036 1.09364 1.33111 1.29827 1.27439 0.95993 1.06278 0.91457 0.84546 0.78854 0.72859 0.79851 1.18363 1.18386 1.17010 1.19757 0.97196 0.88825 1.35116 0.86279 1.23626 0.94579 0.98145 0.98778 1.21374 0.98022 0.87081 1.27967 1.65272 1.02159 1.39918 1.11943 1.24293 0.87777 0.94795 1.28817 1.84706 1.45919 1.60731 1.34853 1.83966 1.06304 0.98915 1.73704 0.87237 0.82781 0.76790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -35.77 10.79 21.84 0.24 -35.53 13 2 C 0.01 0.39 5.49 85.24 0.47 0.85 13 3 Si 1.02 31.51 29.57 68.60 2.03 33.54 13 4 H -0.26 -7.84 7.11 99.48 0.71 -7.13 13 5 H -0.26 -7.54 7.11 99.48 0.71 -6.84 13 6 H -0.25 -7.27 7.11 99.48 0.71 -6.56 13 7 C -0.37 -17.87 9.31 23.10 0.22 -17.66 13 8 H 0.12 5.18 7.85 -2.91 -0.02 5.16 13 9 C -0.03 -1.47 6.23 22.76 0.14 -1.33 13 10 C -0.19 -10.37 11.45 84.94 0.97 -9.40 13 11 N -0.47 -26.72 10.52 -315.56 -3.32 -30.05 13 12 C -0.05 -2.82 8.59 130.49 1.12 -1.70 13 13 O -0.46 -21.78 13.62 -84.85 -1.16 -22.94 13 14 S 0.13 6.57 20.30 -56.49 -1.15 5.43 13 15 H 0.31 12.43 8.30 -92.71 -0.77 11.67 13 16 H 0.15 7.67 8.06 -2.91 -0.02 7.64 13 17 H 0.38 13.86 9.06 -74.05 -0.67 13.18 13 Total: -1.00 -61.84 180.46 0.19 -61.65 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.63 Total: 17.13 kcal Atomic # 6 Polarization: -32.15 SS G_CDS: 2.92 Total: -29.23 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: -3.08 Total: -65.58 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -1.16 Total: -22.94 kcal Atomic # 14 Polarization: 31.51 SS G_CDS: 2.03 Total: 33.54 kcal Atomic # 16 Polarization: 6.57 SS G_CDS: -1.15 Total: 5.43 kcal Total: -61.84 0.19 -61.65 kcal The number of atoms in the molecule is 17 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260691921.mol2 17 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.598 kcal (2) G-P(sol) polarization free energy of solvation -61.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds