Wall clock time and date at job start Mon Mar 30 2020 02:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46894 * 109.47688 * 2 1 4 4 C 1.46900 * 111.00542 * 175.27867 * 3 2 1 5 5 C 1.50700 * 112.99806 * 296.18561 * 4 3 2 6 6 H 1.08005 * 120.00054 * 113.62478 * 5 4 3 7 7 C 1.37880 * 120.00018 * 293.34811 * 5 4 3 8 8 N 1.31510 * 119.99773 * 355.05093 * 7 5 4 9 9 Si 1.86800 * 119.99764 * 175.04718 * 7 5 4 10 10 H 1.48498 * 109.46807 * 90.00411 * 9 7 5 11 11 H 1.48500 * 109.46805 * 209.99833 * 9 7 5 12 12 H 1.48497 * 109.47173 * 330.00284 * 9 7 5 13 13 C 1.54036 * 113.92210 * 68.11514 * 4 3 2 14 14 O 1.44175 * 85.51653 * 91.66174 * 13 4 3 15 15 C 1.44180 * 93.34074 * 24.19298 * 14 13 4 16 16 H 1.08995 * 109.47300 * 180.02562 * 1 2 3 17 17 H 1.09000 * 109.47096 * 300.00611 * 1 2 3 18 18 H 1.09007 * 109.47003 * 59.99829 * 1 2 3 19 19 H 1.09008 * 109.47387 * 239.99454 * 2 1 3 20 20 H 1.09007 * 109.47003 * 120.00171 * 2 1 3 21 21 H 1.00903 * 111.00185 * 299.23376 * 3 2 1 22 22 H 0.96996 * 119.99846 * 180.02562 * 8 7 5 23 23 H 1.09002 * 113.86328 * 205.80951 * 13 4 3 24 24 H 1.08997 * 113.86865 * 337.51446 * 13 4 3 25 25 H 1.08999 * 113.85894 * 221.66004 * 15 14 13 26 26 H 1.09003 * 113.86688 * 89.95553 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4838 1.4256 0.1129 5 6 3.9897 0.8644 1.4168 6 1 4.5724 -0.0449 1.4235 7 6 3.7135 1.5150 2.6007 8 7 3.0933 2.6745 2.5846 9 14 4.2201 0.7491 4.2274 10 1 5.5876 1.2047 4.5844 11 1 3.2674 1.1645 5.2880 12 1 4.2080 -0.7306 4.1029 13 6 4.2211 0.8826 -1.1258 14 8 4.2113 2.2476 -1.5898 15 6 4.0987 2.7883 -0.2580 16 1 -0.3633 -1.0276 0.0005 17 1 -0.3633 0.5139 0.8899 18 1 -0.3633 0.5139 -0.8900 19 1 1.8934 -0.5139 -0.8900 20 1 1.8933 -0.5139 0.8900 21 1 1.7066 1.8792 -0.8220 22 1 2.8994 3.1324 3.4174 23 1 5.2179 0.4968 -0.9117 24 1 3.6217 0.2057 -1.7343 25 1 3.4019 3.6228 -0.1784 26 1 5.0580 2.9844 0.2210 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260740967.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:01 Heat of formation + Delta-G solvation = -14.323031 kcal Electronic energy + Delta-G solvation = -10438.491379 eV Core-core repulsion = 8518.451555 eV Total energy + Delta-G solvation = -1920.039824 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.28181 -34.47268 -32.42098 -29.45314 -26.56869 -25.34229 -24.23000 -21.15979 -18.77202 -16.54340 -15.19236 -14.98712 -14.56482 -14.12538 -13.59180 -13.22155 -12.71710 -11.69878 -11.56051 -11.14852 -10.96295 -10.95274 -10.49367 -10.46863 -10.16136 -9.40612 -8.98854 -8.67205 -8.29252 -6.99355 -5.99045 -4.09955 3.29248 3.37145 3.39606 4.41469 4.95271 5.17560 5.45795 5.85280 6.06246 6.12514 6.19526 6.32566 6.45064 6.48717 6.76251 6.85116 6.93406 7.04014 7.29351 7.41153 7.79955 8.04222 8.51649 8.73638 8.99249 9.57888 11.07184 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.038718 B = 0.021280 C = 0.016338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.000816 B = 1315.461565 C = 1713.399486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.067 3.933 3 N -0.643 5.643 4 C 0.204 3.796 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.087 3.913 8 N -0.854 5.854 9 Si 0.884 3.116 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 C -0.009 4.009 14 O -0.415 6.415 15 C 0.059 3.941 16 H 0.045 0.955 17 H 0.059 0.941 18 H 0.042 0.958 19 H 0.005 0.995 20 H 0.079 0.921 21 H 0.310 0.690 22 H 0.259 0.741 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.502 -3.044 -2.756 4.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.063 4.063 3 N -0.271 5.271 4 C 0.114 3.886 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.119 4.119 8 N -0.488 5.488 9 Si 0.712 3.288 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 C -0.089 4.089 14 O -0.335 6.335 15 C -0.018 4.018 16 H 0.064 0.936 17 H 0.078 0.922 18 H 0.061 0.939 19 H 0.023 0.977 20 H 0.097 0.903 21 H 0.127 0.873 22 H 0.069 0.931 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.700 -2.672 -2.207 3.860 hybrid contribution 0.499 -0.735 0.220 0.915 sum -1.201 -3.407 -1.987 4.123 Atomic orbital electron populations 1.21753 0.96850 1.00034 1.01574 1.21643 0.93495 0.91319 0.99807 1.60517 1.11283 1.12608 1.42716 1.21085 0.84300 0.91144 0.92118 1.20747 1.34747 1.10815 0.90465 0.92416 1.24906 0.93975 0.94481 0.98569 1.70002 1.38585 1.13496 1.26729 0.86748 0.78243 0.79824 0.83996 1.20735 1.21167 1.19949 1.24792 1.00662 0.85116 0.98324 1.89419 1.95806 1.19493 1.28762 1.24032 0.99579 0.99142 0.79042 0.93557 0.92165 0.93925 0.97651 0.90281 0.87329 0.93101 0.91391 0.92129 0.90381 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 10.21 37.16 0.38 -2.10 15 2 C 0.07 1.37 6.06 -3.83 -0.02 1.35 15 3 N -0.64 -14.97 6.38 -107.90 -0.69 -15.66 15 4 C 0.20 5.02 0.52 -131.67 -0.07 4.95 15 5 C -0.53 -14.09 7.41 -34.44 -0.26 -14.34 15 6 H 0.06 1.53 7.82 -52.48 -0.41 1.12 15 7 C 0.09 2.35 5.41 -17.82 -0.10 2.25 15 8 N -0.85 -23.78 12.69 55.43 0.70 -23.08 15 9 Si 0.88 20.73 29.54 -169.99 -5.02 15.71 15 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 13 C -0.01 -0.21 8.31 37.61 0.31 0.10 15 14 O -0.42 -9.84 12.37 -35.23 -0.44 -10.28 15 15 C 0.06 1.44 7.73 37.61 0.29 1.73 15 16 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 17 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 18 H 0.04 0.68 8.14 -51.92 -0.42 0.25 15 19 H 0.01 0.11 6.98 -51.92 -0.36 -0.26 15 20 H 0.08 1.78 7.25 -51.92 -0.38 1.41 15 21 H 0.31 6.88 8.63 -39.29 -0.34 6.54 15 22 H 0.26 6.94 8.31 -40.82 -0.34 6.60 15 23 H 0.07 1.48 8.09 -51.93 -0.42 1.06 15 24 H 0.06 1.26 6.98 -51.93 -0.36 0.89 15 25 H 0.08 1.93 8.14 -51.93 -0.42 1.51 15 26 H 0.07 1.76 8.09 -51.93 -0.42 1.34 15 LS Contribution 222.67 15.07 3.36 3.36 Total: -1.00 -27.99 222.67 -5.06 -33.05 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -3.52 Total: 2.95 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 0.54 Total: -6.05 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.02 Total: -38.74 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -0.44 Total: -10.28 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -27.99 -5.06 -33.05 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260740967.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.730 kcal (2) G-P(sol) polarization free energy of solvation -27.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds