Wall clock time and date at job start Mon Mar 30 2020 02:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46894 * 109.47688 * 2 1 4 4 C 1.46900 * 111.00542 * 175.27867 * 3 2 1 5 5 C 1.50700 * 112.99806 * 296.18561 * 4 3 2 6 6 H 1.08005 * 120.00054 * 113.62478 * 5 4 3 7 7 C 1.37880 * 120.00018 * 293.34811 * 5 4 3 8 8 N 1.31510 * 119.99773 * 355.05093 * 7 5 4 9 9 Si 1.86800 * 119.99764 * 175.04718 * 7 5 4 10 10 H 1.48498 * 109.46807 * 90.00411 * 9 7 5 11 11 H 1.48500 * 109.46805 * 209.99833 * 9 7 5 12 12 H 1.48497 * 109.47173 * 330.00284 * 9 7 5 13 13 C 1.54036 * 113.92210 * 68.11514 * 4 3 2 14 14 O 1.44175 * 85.51653 * 91.66174 * 13 4 3 15 15 C 1.44180 * 93.34074 * 24.19298 * 14 13 4 16 16 H 1.08995 * 109.47300 * 180.02562 * 1 2 3 17 17 H 1.09000 * 109.47096 * 300.00611 * 1 2 3 18 18 H 1.09007 * 109.47003 * 59.99829 * 1 2 3 19 19 H 1.09008 * 109.47387 * 239.99454 * 2 1 3 20 20 H 1.09007 * 109.47003 * 120.00171 * 2 1 3 21 21 H 1.00903 * 111.00185 * 299.23376 * 3 2 1 22 22 H 0.96996 * 119.99846 * 180.02562 * 8 7 5 23 23 H 1.09002 * 113.86328 * 205.80951 * 13 4 3 24 24 H 1.08997 * 113.86865 * 337.51446 * 13 4 3 25 25 H 1.08999 * 113.85894 * 221.66004 * 15 14 13 26 26 H 1.09003 * 113.86688 * 89.95553 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4838 1.4256 0.1129 5 6 3.9897 0.8644 1.4168 6 1 4.5724 -0.0449 1.4235 7 6 3.7135 1.5150 2.6007 8 7 3.0933 2.6745 2.5846 9 14 4.2201 0.7491 4.2274 10 1 5.5876 1.2047 4.5844 11 1 3.2674 1.1645 5.2880 12 1 4.2080 -0.7306 4.1029 13 6 4.2211 0.8826 -1.1258 14 8 4.2113 2.2476 -1.5898 15 6 4.0987 2.7883 -0.2580 16 1 -0.3633 -1.0276 0.0005 17 1 -0.3633 0.5139 0.8899 18 1 -0.3633 0.5139 -0.8900 19 1 1.8934 -0.5139 -0.8900 20 1 1.8933 -0.5139 0.8900 21 1 1.7066 1.8792 -0.8220 22 1 2.8994 3.1324 3.4174 23 1 5.2179 0.4968 -0.9117 24 1 3.6217 0.2057 -1.7343 25 1 3.4019 3.6228 -0.1784 26 1 5.0580 2.9844 0.2210 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260740967.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:00 Heat of formation + Delta-G solvation = -35.013274 kcal Electronic energy + Delta-G solvation = -10439.388575 eV Core-core repulsion = 8518.451555 eV Total energy + Delta-G solvation = -1920.937020 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.15526 -36.21811 -34.39789 -31.18961 -28.38635 -27.21049 -26.20234 -22.76798 -20.69725 -18.49261 -17.06784 -16.89490 -16.38543 -16.01704 -15.32450 -14.86825 -14.48960 -13.49080 -13.41036 -12.90594 -12.82093 -12.57228 -12.31605 -12.20364 -11.83087 -11.29306 -10.95950 -10.58611 -10.27438 -8.78102 -8.02053 -6.18519 1.43854 1.46947 1.54712 2.46415 3.08721 3.20838 3.66752 4.22166 4.36583 4.50804 4.61476 4.64109 4.78697 4.88819 4.98160 5.06433 5.32779 5.40611 5.48528 5.50422 5.74019 6.11213 6.64500 6.82458 7.11430 7.51822 9.02818 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.038718 B = 0.021280 C = 0.016338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.000816 B = 1315.461565 C = 1713.399486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.067 3.933 3 N -0.658 5.658 4 C 0.192 3.808 5 C -0.541 4.541 6 H 0.053 0.947 7 C 0.045 3.955 8 N -0.881 5.881 9 Si 0.943 3.057 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.271 1.271 13 C -0.002 4.002 14 O -0.417 6.417 15 C 0.062 3.938 16 H 0.073 0.927 17 H 0.044 0.956 18 H 0.056 0.944 19 H 0.019 0.981 20 H 0.054 0.946 21 H 0.316 0.684 22 H 0.258 0.742 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.777 -3.971 -2.969 5.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.062 4.062 3 N -0.287 5.287 4 C 0.101 3.899 5 C -0.579 4.579 6 H 0.072 0.928 7 C -0.159 4.159 8 N -0.516 5.516 9 Si 0.769 3.231 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.196 1.196 13 C -0.081 4.081 14 O -0.337 6.337 15 C -0.015 4.015 16 H 0.092 0.908 17 H 0.063 0.937 18 H 0.075 0.925 19 H 0.037 0.963 20 H 0.072 0.928 21 H 0.133 0.867 22 H 0.067 0.933 23 H 0.091 0.909 24 H 0.099 0.901 25 H 0.088 0.912 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.972 -3.612 -2.430 4.779 hybrid contribution 0.591 -0.465 0.240 0.789 sum -1.381 -4.078 -2.190 4.830 Atomic orbital electron populations 1.21670 0.94223 1.01844 1.01502 1.21674 0.95656 0.89729 0.99161 1.60419 1.10554 1.14404 1.43276 1.21143 0.85360 0.91136 0.92236 1.20998 1.34675 1.10572 0.91680 0.92847 1.25532 0.94134 0.94836 1.01414 1.70106 1.39769 1.14484 1.27265 0.85817 0.77849 0.79063 0.80323 1.20301 1.21277 1.19592 1.24818 1.00998 0.84825 0.97473 1.89405 1.95813 1.20231 1.28258 1.23892 0.98946 0.99181 0.79484 0.90823 0.93707 0.92478 0.96275 0.92757 0.86711 0.93270 0.90852 0.90101 0.91167 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.31 10.21 71.98 0.74 -3.58 15 2 C 0.07 2.63 6.06 86.30 0.52 3.16 15 3 N -0.66 -29.95 6.38 -506.31 -3.23 -33.18 15 4 C 0.19 9.30 0.52 3.48 0.00 9.30 15 5 C -0.54 -28.48 7.41 25.60 0.19 -28.29 15 6 H 0.05 2.79 7.82 -2.91 -0.02 2.77 15 7 C 0.04 2.39 5.41 84.66 0.46 2.85 15 8 N -0.88 -49.03 12.69 21.45 0.27 -48.76 15 9 Si 0.94 42.31 29.54 68.60 2.03 44.33 15 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 15 11 H -0.29 -12.83 7.11 99.48 0.71 -12.13 15 12 H -0.27 -11.90 7.11 99.48 0.71 -11.20 15 13 C 0.00 -0.08 8.31 72.27 0.60 0.52 15 14 O -0.42 -19.25 12.37 -148.98 -1.84 -21.09 15 15 C 0.06 3.03 7.73 72.27 0.56 3.58 15 16 H 0.07 1.95 8.14 -2.39 -0.02 1.93 15 17 H 0.04 1.56 8.14 -2.39 -0.02 1.54 15 18 H 0.06 1.65 8.14 -2.38 -0.02 1.63 15 19 H 0.02 0.70 6.98 -2.38 -0.02 0.68 15 20 H 0.05 2.40 7.25 -2.38 -0.02 2.38 15 21 H 0.32 13.61 8.63 -89.69 -0.77 12.84 15 22 H 0.26 13.84 8.31 -92.71 -0.77 13.07 15 23 H 0.07 3.07 8.09 -2.39 -0.02 3.05 15 24 H 0.08 3.14 6.98 -2.39 -0.02 3.12 15 25 H 0.07 3.49 8.14 -2.39 -0.02 3.47 15 26 H 0.06 3.08 8.09 -2.39 -0.02 3.06 15 Total: -1.00 -57.09 222.67 0.68 -56.41 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.39 Total: 14.75 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: 3.07 Total: -12.46 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -2.96 Total: -81.94 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -1.84 Total: -21.09 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Total: -57.09 0.68 -56.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260740967.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.400 kcal (2) G-P(sol) polarization free energy of solvation -57.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds