Wall clock time and date at job start Mon Mar 30 2020 01:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 110.62011 * 2 1 4 4 H 1.07999 * 119.99650 * 237.17730 * 3 2 1 5 5 C 1.37873 * 119.99739 * 57.17950 * 3 2 1 6 6 N 1.31510 * 120.00505 * 359.97438 * 5 3 2 7 7 Si 1.86801 * 119.99646 * 179.97438 * 5 3 2 8 8 H 1.48500 * 109.47517 * 59.99738 * 7 5 3 9 9 H 1.48506 * 109.47111 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47202 * 299.99648 * 7 5 3 11 11 C 1.54091 * 110.56440 * 237.17837 * 2 1 3 12 12 O 1.45701 * 104.12999 * 241.49870 * 11 2 1 13 13 C 1.33775 * 109.48063 * 359.93023 * 12 11 2 14 14 O 1.21506 * 123.07301 * 179.97438 * 13 12 11 15 15 N 1.34005 * 113.85297 * 0.02562 * 13 12 11 16 16 H 1.08996 * 109.47405 * 182.82272 * 1 2 3 17 17 H 1.08997 * 109.47123 * 302.82406 * 1 2 3 18 18 H 1.08998 * 109.47043 * 62.81953 * 1 2 3 19 19 H 0.96998 * 120.00207 * 180.02562 * 6 5 3 20 20 H 1.09002 * 110.52223 * 122.79658 * 11 2 1 21 21 H 1.09002 * 110.52259 * 0.19694 * 11 2 1 22 22 H 0.97003 * 125.55920 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0608 1.4105 0.0000 4 1 2.7254 1.7373 -0.7860 5 6 1.6978 2.2835 1.0034 6 7 0.8881 1.8857 1.9603 7 14 2.3562 4.0317 1.0038 8 1 1.9327 4.7205 -0.2417 9 1 1.8207 4.7621 2.1807 10 1 3.8393 4.0020 1.0732 11 6 2.0713 -0.7820 -1.2124 12 8 2.8275 -1.8776 -0.6202 13 6 2.7683 -1.7909 0.7134 14 8 3.3150 -2.5837 1.4543 15 7 2.0499 -0.7505 1.1575 16 1 -0.3634 -1.0264 0.0506 17 1 -0.3633 0.5570 0.8636 18 1 -0.3633 0.4694 -0.9142 19 1 0.6324 2.5001 2.6660 20 1 2.7232 -0.1495 -1.8150 21 1 1.2497 -1.1673 -1.8163 22 1 1.8966 -0.5273 2.0889 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260746544.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:10 Heat of formation + Delta-G solvation = -83.656673 kcal Electronic energy + Delta-G solvation = -10233.520320 eV Core-core repulsion = 8174.640870 eV Total energy + Delta-G solvation = -2058.879451 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.38484 -36.21272 -34.78002 -32.09704 -29.80342 -25.89313 -25.30565 -21.18488 -20.36334 -17.45113 -16.52919 -15.54846 -15.14112 -14.59964 -13.60103 -13.11401 -12.93859 -12.57676 -11.87781 -11.49028 -11.08832 -10.91864 -10.58808 -10.25788 -9.87367 -9.64459 -9.50499 -8.81104 -7.92379 -6.38126 -4.53940 3.13493 3.20071 3.22306 3.82268 3.94923 4.14832 4.70223 5.12377 5.57309 5.81317 6.09064 6.41922 6.63931 6.72067 6.95708 7.41046 7.70063 7.78052 8.12911 8.38883 8.63088 9.18294 9.32857 10.64546 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.063338 B = 0.017145 C = 0.016646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.963989 B = 1632.692422 C = 1681.713042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.241 3.759 3 C -0.531 4.531 4 H 0.069 0.931 5 C 0.078 3.922 6 N -0.880 5.880 7 Si 0.905 3.095 8 H -0.273 1.273 9 H -0.284 1.284 10 H -0.274 1.274 11 C 0.047 3.953 12 O -0.351 6.351 13 C 0.632 3.368 14 O -0.575 6.575 15 N -0.700 5.700 16 H 0.020 0.980 17 H 0.099 0.901 18 H 0.047 0.953 19 H 0.270 0.730 20 H 0.093 0.907 21 H 0.083 0.917 22 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.694 0.961 -3.774 4.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.158 3.842 3 C -0.569 4.569 4 H 0.087 0.913 5 C -0.128 4.128 6 N -0.517 5.517 7 Si 0.732 3.268 8 H -0.198 1.198 9 H -0.210 1.210 10 H -0.199 1.199 11 C -0.028 4.028 12 O -0.262 6.262 13 C 0.384 3.616 14 O -0.466 6.466 15 N -0.368 5.368 16 H 0.039 0.961 17 H 0.117 0.883 18 H 0.066 0.934 19 H 0.080 0.920 20 H 0.112 0.888 21 H 0.101 0.899 22 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -1.395 0.434 -3.564 3.852 hybrid contribution 0.149 1.246 0.438 1.330 sum -1.246 1.681 -3.125 3.761 Atomic orbital electron populations 1.22058 0.95437 0.98911 1.03903 1.19439 0.92807 0.91431 0.80572 1.21205 1.30389 0.94015 1.11290 0.91287 1.25036 0.93685 0.99309 0.94752 1.69756 1.32902 1.36585 1.12452 0.86431 0.79491 0.83044 0.77812 1.19824 1.20983 1.19939 1.24544 0.95099 0.85930 0.97248 1.87045 1.69543 1.49773 1.19814 1.18685 0.79435 0.82156 0.81321 1.90916 1.53374 1.47043 1.55224 1.46774 1.51823 1.26564 1.11633 0.96052 0.88259 0.93407 0.92023 0.88846 0.89878 0.72844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.55 37.16 0.32 -2.72 14 2 C 0.24 5.42 0.93 -131.90 -0.12 5.30 14 3 C -0.53 -12.86 8.31 -34.44 -0.29 -13.15 14 4 H 0.07 1.64 7.38 -52.49 -0.39 1.25 14 5 C 0.08 1.89 5.28 -17.82 -0.09 1.79 14 6 N -0.88 -21.81 10.55 55.43 0.58 -21.23 14 7 Si 0.91 19.29 29.54 -169.99 -5.02 14.27 14 8 H -0.27 -5.72 7.11 56.52 0.40 -5.32 14 9 H -0.28 -6.06 7.11 56.52 0.40 -5.66 14 10 H -0.27 -5.95 7.11 56.52 0.40 -5.55 14 11 C 0.05 0.93 7.51 37.73 0.28 1.21 14 12 O -0.35 -7.98 11.09 -37.84 -0.42 -8.40 14 13 C 0.63 15.64 9.16 53.71 0.49 16.13 14 14 O -0.57 -15.62 18.04 -19.11 -0.34 -15.96 14 15 N -0.70 -16.62 5.53 -52.89 -0.29 -16.92 14 16 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 14 17 H 0.10 2.30 5.88 -51.93 -0.31 2.00 14 18 H 0.05 0.92 8.14 -51.93 -0.42 0.49 14 19 H 0.27 6.45 8.31 -40.82 -0.34 6.11 14 20 H 0.09 1.72 7.45 -51.93 -0.39 1.33 14 21 H 0.08 1.40 7.73 -51.93 -0.40 1.00 14 22 H 0.43 10.33 8.48 -40.82 -0.35 9.98 14 LS Contribution 197.33 15.07 2.97 2.97 Total: -1.00 -27.36 197.33 -3.74 -31.09 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -1.81 Total: 5.61 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 0.59 Total: 8.56 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.29 Total: -38.14 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.76 Total: -24.37 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 2.97 Total: 2.97 kcal Total: -27.36 -3.74 -31.09 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260746544.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.562 kcal (2) G-P(sol) polarization free energy of solvation -27.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds