Wall clock time and date at job start Mon Mar 30 2020 01:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50709 * 110.50795 * 2 1 4 4 H 1.07994 * 119.99977 * 117.32592 * 3 2 1 5 5 C 1.37869 * 119.99695 * 297.32805 * 3 2 1 6 6 N 1.31519 * 120.00310 * 354.10020 * 5 3 2 7 7 Si 1.86804 * 119.99930 * 174.09586 * 5 3 2 8 8 H 1.48495 * 109.47033 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.47235 * 239.99924 * 7 5 3 10 10 H 1.48505 * 109.46612 * 120.00088 * 7 5 3 11 11 C 1.54087 * 110.69415 * 122.82983 * 2 1 3 12 12 O 1.45697 * 104.01397 * 118.63112 * 11 2 1 13 13 C 1.33777 * 109.47511 * 0.02562 * 12 11 2 14 14 O 1.21508 * 123.07408 * 179.97438 * 13 12 11 15 15 N 1.34008 * 113.85571 * 359.97438 * 13 12 11 16 16 H 1.09001 * 109.46905 * 55.02897 * 1 2 3 17 17 H 1.08999 * 109.47259 * 175.03085 * 1 2 3 18 18 H 1.08997 * 109.46699 * 295.03119 * 1 2 3 19 19 H 0.96999 * 120.00140 * 5.18911 * 6 5 3 20 20 H 1.09004 * 110.52545 * 237.26643 * 11 2 1 21 21 H 1.08998 * 110.52046 * 0.02562 * 11 2 1 22 22 H 0.96998 * 125.56270 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0580 1.4116 0.0000 4 1 2.6493 1.7669 0.8309 5 6 1.7860 2.2492 -1.0608 6 7 1.1664 1.7845 -2.1237 7 14 2.2975 4.0444 -0.9882 8 1 2.9738 4.3145 0.3059 9 1 1.0948 4.9071 -1.1084 10 1 3.2312 4.3385 -2.1050 11 6 2.0745 -0.7815 1.2112 12 8 2.8328 -1.8732 0.6148 13 6 2.7699 -1.7837 -0.7185 14 8 3.3181 -2.5725 -1.4627 15 7 2.0470 -0.7447 -1.1584 16 1 -0.3633 0.5890 -0.8421 17 1 -0.3634 -1.0238 -0.0890 18 1 -0.3632 0.4348 0.9311 19 1 0.8340 0.8732 -2.1316 20 1 2.7259 -0.1480 1.8133 21 1 1.2546 -1.1712 1.8145 22 1 1.8906 -0.5199 -2.0890 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260746546.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:11 Heat of formation + Delta-G solvation = -80.134552 kcal Electronic energy + Delta-G solvation = -10291.575987 eV Core-core repulsion = 8232.849267 eV Total energy + Delta-G solvation = -2058.726720 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.62081 -36.41588 -35.25156 -31.96039 -29.98170 -26.21930 -24.91454 -21.33084 -20.70938 -18.08464 -16.66443 -15.76424 -15.24424 -14.13063 -13.95232 -13.21908 -13.07179 -12.75264 -12.32154 -11.41026 -11.24780 -10.88949 -10.76467 -10.30942 -9.88449 -9.72039 -9.36324 -8.77315 -8.02713 -6.71218 -4.55882 3.27982 3.29333 3.44102 3.65495 3.78427 4.24384 4.57107 5.09048 5.32996 5.65115 5.94575 6.15660 6.33499 6.38972 6.66278 6.97970 7.53719 7.87081 7.98649 8.28226 8.43918 9.09823 9.20124 10.60563 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.063971 B = 0.017440 C = 0.016749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.593388 B = 1605.162471 C = 1671.299222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.222 3.778 3 C -0.604 4.604 4 H 0.066 0.934 5 C 0.035 3.965 6 N -0.898 5.898 7 Si 1.079 2.921 8 H -0.286 1.286 9 H -0.283 1.283 10 H -0.284 1.284 11 C 0.055 3.945 12 O -0.348 6.348 13 C 0.637 3.363 14 O -0.568 6.568 15 N -0.715 5.715 16 H 0.071 0.929 17 H 0.032 0.968 18 H 0.059 0.941 19 H 0.272 0.728 20 H 0.097 0.903 21 H 0.084 0.916 22 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.938 0.687 4.919 5.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.138 3.862 3 C -0.643 4.643 4 H 0.084 0.916 5 C -0.172 4.172 6 N -0.535 5.535 7 Si 0.906 3.094 8 H -0.212 1.212 9 H -0.209 1.209 10 H -0.210 1.210 11 C -0.020 4.020 12 O -0.258 6.258 13 C 0.389 3.611 14 O -0.458 6.458 15 N -0.386 5.386 16 H 0.090 0.910 17 H 0.051 0.949 18 H 0.078 0.922 19 H 0.086 0.914 20 H 0.115 0.885 21 H 0.102 0.898 22 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -1.501 1.471 3.997 4.516 hybrid contribution -0.219 -1.139 0.499 1.263 sum -1.720 0.332 4.495 4.825 Atomic orbital electron populations 1.22160 0.95976 0.99544 1.03021 1.19636 0.92333 0.92719 0.81501 1.22141 1.37857 0.94498 1.09771 0.91551 1.25995 0.93815 1.05875 0.91487 1.70905 1.35244 1.19615 1.27735 0.83387 0.76607 0.73564 0.75864 1.21177 1.20941 1.21027 1.24442 0.95080 0.85801 0.96654 1.87058 1.69298 1.49858 1.19610 1.18657 0.79176 0.81864 0.81369 1.90932 1.52870 1.47028 1.54943 1.47059 1.52666 1.27525 1.11349 0.91003 0.94921 0.92182 0.91383 0.88501 0.89778 0.73045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 8.40 37.16 0.31 -2.68 14 2 C 0.22 4.95 0.88 -132.07 -0.12 4.84 14 3 C -0.60 -14.90 8.26 -34.44 -0.28 -15.18 14 4 H 0.07 1.62 7.40 -52.49 -0.39 1.23 14 5 C 0.04 0.89 5.21 -17.82 -0.09 0.79 14 6 N -0.90 -23.81 12.75 55.43 0.71 -23.10 14 7 Si 1.08 22.77 29.91 -169.99 -5.08 17.69 14 8 H -0.29 -5.75 7.11 56.52 0.40 -5.35 14 9 H -0.28 -5.86 7.11 56.52 0.40 -5.46 14 10 H -0.28 -6.06 7.11 56.52 0.40 -5.66 14 11 C 0.06 1.08 7.52 37.73 0.28 1.37 14 12 O -0.35 -7.85 11.09 -37.85 -0.42 -8.27 14 13 C 0.64 15.71 9.16 53.71 0.49 16.20 14 14 O -0.57 -15.37 18.04 -19.11 -0.34 -15.71 14 15 N -0.72 -16.95 5.22 -53.09 -0.28 -17.23 14 16 H 0.07 1.59 5.90 -51.93 -0.31 1.28 14 17 H 0.03 0.60 8.14 -51.93 -0.42 0.17 14 18 H 0.06 1.09 8.14 -51.93 -0.42 0.67 14 19 H 0.27 6.99 4.00 -40.82 -0.16 6.82 14 20 H 0.10 1.80 7.46 -51.93 -0.39 1.41 14 21 H 0.08 1.38 7.74 -51.93 -0.40 0.98 14 22 H 0.43 10.24 7.02 -40.82 -0.29 9.95 14 LS Contribution 193.54 15.07 2.92 2.92 Total: -1.00 -28.83 193.54 -3.48 -32.32 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -1.57 Total: 6.05 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 0.60 Total: 5.34 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.43 Total: -40.33 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.76 Total: -23.98 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.08 Total: 17.69 kcal Total LS contribution 2.92 Total: 2.92 kcal Total: -28.83 -3.48 -32.32 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260746546.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.819 kcal (2) G-P(sol) polarization free energy of solvation -28.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds