Wall clock time and date at job start Mon Mar 30 2020 01:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50701 * 110.46556 * 2 1 4 4 H 1.08002 * 119.99625 * 239.29834 * 3 2 1 5 5 C 1.37882 * 119.99941 * 59.29699 * 3 2 1 6 6 N 1.31512 * 119.99839 * 0.02562 * 5 3 2 7 7 Si 1.86802 * 119.99732 * 180.02562 * 5 3 2 8 8 H 1.48505 * 109.47311 * 359.97438 * 7 5 3 9 9 H 1.48491 * 109.47104 * 120.00027 * 7 5 3 10 10 H 1.48501 * 109.46853 * 239.99941 * 7 5 3 11 11 C 1.54087 * 110.52354 * 237.21564 * 2 1 3 12 12 N 1.47085 * 103.77584 * 241.37192 * 11 2 1 13 13 C 1.34008 * 108.88415 * 0.02562 * 12 11 2 14 14 O 1.21509 * 123.06839 * 179.97438 * 13 12 11 15 15 O 1.33761 * 113.85527 * 359.97438 * 13 12 11 16 16 H 1.08993 * 109.47070 * 298.82744 * 1 2 3 17 17 H 1.08997 * 109.46759 * 58.82274 * 1 2 3 18 18 H 1.09000 * 109.47239 * 178.82207 * 1 2 3 19 19 H 0.97006 * 119.99498 * 180.02562 * 6 5 3 20 20 H 1.09009 * 110.56229 * 359.94571 * 11 2 1 21 21 H 1.08995 * 110.56397 * 122.79380 * 11 2 1 22 22 H 0.97002 * 125.55602 * 179.97438 * 12 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0570 1.4119 0.0000 4 1 2.6932 1.7508 -0.8043 5 6 1.7268 2.2710 1.0267 6 7 0.9525 1.8580 2.0062 7 14 2.3794 4.0213 1.0263 8 1 3.2223 4.2351 -0.1775 9 1 1.2406 4.9741 1.0093 10 1 3.1946 4.2459 2.2471 11 6 2.0703 -0.7814 -1.2132 12 7 2.8341 -1.8832 -0.6083 13 6 2.7626 -1.7793 0.7259 14 8 3.3043 -2.5614 1.4818 15 8 2.0404 -0.7360 1.1493 16 1 -0.3633 0.4955 0.9003 17 1 -0.3633 0.5320 -0.8792 18 1 -0.3634 -1.0274 -0.0211 19 1 0.7199 2.4626 2.7284 20 1 1.2487 -1.1701 -1.8150 21 1 2.7221 -0.1494 -1.8162 22 1 3.3111 -2.5731 -1.0956 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260763442.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:07 Heat of formation + Delta-G solvation = -80.015341 kcal Electronic energy + Delta-G solvation = -10231.936508 eV Core-core repulsion = 8173.214958 eV Total energy + Delta-G solvation = -2058.721551 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.20196 -36.25856 -33.49668 -33.16192 -30.23753 -25.68964 -24.83494 -21.19246 -20.62745 -17.65424 -16.15886 -15.27785 -15.03139 -14.70184 -13.72885 -13.12720 -12.78935 -12.24579 -11.91481 -11.40647 -11.04759 -10.82751 -10.43903 -10.35466 -9.92664 -9.56232 -8.96221 -8.74209 -8.42671 -6.26157 -4.47581 3.17433 3.26734 3.29250 3.84158 3.91172 4.22132 4.76811 5.27309 5.55660 5.88431 6.10902 6.39825 6.57510 6.79573 6.92903 7.48546 7.62883 7.74674 7.89702 8.47974 8.76830 9.14455 9.28156 10.76515 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.063226 B = 0.017296 C = 0.016742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.750966 B = 1618.439782 C = 1672.001626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.217 3.783 3 C -0.543 4.543 4 H 0.073 0.927 5 C 0.082 3.918 6 N -0.851 5.851 7 Si 0.903 3.097 8 H -0.270 1.270 9 H -0.280 1.280 10 H -0.280 1.280 11 C 0.076 3.924 12 N -0.750 5.750 13 C 0.635 3.365 14 O -0.572 6.572 15 O -0.307 6.307 16 H 0.097 0.903 17 H 0.055 0.945 18 H 0.021 0.979 19 H 0.268 0.732 20 H 0.068 0.932 21 H 0.079 0.921 22 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.618 -0.717 -6.630 6.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.182 3.818 3 C -0.580 4.580 4 H 0.091 0.909 5 C -0.126 4.126 6 N -0.486 5.486 7 Si 0.730 3.270 8 H -0.194 1.194 9 H -0.205 1.205 10 H -0.205 1.205 11 C -0.049 4.049 12 N -0.421 5.421 13 C 0.390 3.610 14 O -0.462 6.462 15 O -0.215 6.215 16 H 0.116 0.884 17 H 0.074 0.926 18 H 0.040 0.960 19 H 0.078 0.922 20 H 0.086 0.914 21 H 0.097 0.903 22 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -0.626 -0.809 -5.725 5.816 hybrid contribution 0.577 0.603 -0.370 0.912 sum -0.049 -0.207 -6.095 6.099 Atomic orbital electron populations 1.21930 0.94600 0.98718 1.04306 1.20888 0.92820 0.90743 0.77348 1.21125 1.33815 0.93115 1.09935 0.90892 1.25109 0.93645 0.99222 0.94662 1.69946 1.32907 1.35844 1.09870 0.86363 0.78940 0.83228 0.78477 1.19402 1.20530 1.20548 1.23035 0.95499 0.88196 0.98152 1.46048 1.56945 1.31981 1.07128 1.19063 0.78443 0.81390 0.82133 1.90891 1.51872 1.44898 1.58564 1.87645 1.61336 1.35993 1.36568 0.88411 0.92595 0.95958 0.92237 0.91398 0.90280 0.74415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.55 37.16 0.32 -2.75 14 2 C 0.22 5.19 0.97 -91.20 -0.09 5.11 14 3 C -0.54 -13.97 8.33 -34.44 -0.29 -14.26 14 4 H 0.07 1.80 7.39 -52.49 -0.39 1.41 14 5 C 0.08 2.15 5.29 -17.82 -0.09 2.06 14 6 N -0.85 -23.42 11.08 55.43 0.61 -22.80 14 7 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 14 8 H -0.27 -5.85 7.11 56.52 0.40 -5.45 14 9 H -0.28 -6.07 7.11 56.52 0.40 -5.67 14 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 14 11 C 0.08 1.45 7.35 -3.16 -0.02 1.42 14 12 N -0.75 -14.63 6.40 -64.74 -0.41 -15.05 14 13 C 0.63 15.88 9.16 53.71 0.49 16.38 14 14 O -0.57 -15.69 18.04 -19.12 -0.34 -16.03 14 15 O -0.31 -8.42 10.15 -37.81 -0.38 -8.80 14 16 H 0.10 2.44 6.14 -51.93 -0.32 2.12 14 17 H 0.06 1.11 8.14 -51.93 -0.42 0.68 14 18 H 0.02 0.44 8.14 -51.93 -0.42 0.02 14 19 H 0.27 6.94 8.31 -40.82 -0.34 6.60 14 20 H 0.07 1.10 7.73 -51.92 -0.40 0.69 14 21 H 0.08 1.41 7.46 -51.93 -0.39 1.02 14 22 H 0.42 6.54 8.96 -40.82 -0.37 6.17 14 LS Contribution 198.46 15.07 2.99 2.99 Total: -1.00 -30.93 198.46 -4.08 -35.01 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -1.84 Total: 1.68 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 0.32 Total: 7.95 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.20 Total: -37.85 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.73 Total: -24.84 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 2.99 Total: 2.99 kcal Total: -30.93 -4.08 -35.01 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260763442.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.006 kcal (2) G-P(sol) polarization free energy of solvation -30.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds