Wall clock time and date at job start Mon Mar 30 2020 01:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50701 * 110.46556 * 2 1 4 4 H 1.08002 * 119.99625 * 239.29834 * 3 2 1 5 5 C 1.37882 * 119.99941 * 59.29699 * 3 2 1 6 6 N 1.31512 * 119.99839 * 0.02562 * 5 3 2 7 7 Si 1.86802 * 119.99732 * 180.02562 * 5 3 2 8 8 H 1.48505 * 109.47311 * 359.97438 * 7 5 3 9 9 H 1.48491 * 109.47104 * 120.00027 * 7 5 3 10 10 H 1.48501 * 109.46853 * 239.99941 * 7 5 3 11 11 C 1.54087 * 110.52354 * 237.21564 * 2 1 3 12 12 N 1.47085 * 103.77584 * 241.37192 * 11 2 1 13 13 C 1.34008 * 108.88415 * 0.02562 * 12 11 2 14 14 O 1.21509 * 123.06839 * 179.97438 * 13 12 11 15 15 O 1.33761 * 113.85527 * 359.97438 * 13 12 11 16 16 H 1.08993 * 109.47070 * 298.82744 * 1 2 3 17 17 H 1.08997 * 109.46759 * 58.82274 * 1 2 3 18 18 H 1.09000 * 109.47239 * 178.82207 * 1 2 3 19 19 H 0.97006 * 119.99498 * 180.02562 * 6 5 3 20 20 H 1.09009 * 110.56229 * 359.94571 * 11 2 1 21 21 H 1.08995 * 110.56397 * 122.79380 * 11 2 1 22 22 H 0.97002 * 125.55602 * 179.97438 * 12 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0570 1.4119 0.0000 4 1 2.6932 1.7508 -0.8043 5 6 1.7268 2.2710 1.0267 6 7 0.9525 1.8580 2.0062 7 14 2.3794 4.0213 1.0263 8 1 3.2223 4.2351 -0.1775 9 1 1.2406 4.9741 1.0093 10 1 3.1946 4.2459 2.2471 11 6 2.0703 -0.7814 -1.2132 12 7 2.8341 -1.8832 -0.6083 13 6 2.7626 -1.7793 0.7259 14 8 3.3043 -2.5614 1.4818 15 8 2.0404 -0.7360 1.1493 16 1 -0.3633 0.4955 0.9003 17 1 -0.3633 0.5320 -0.8792 18 1 -0.3634 -1.0274 -0.0211 19 1 0.7199 2.4626 2.7284 20 1 1.2487 -1.1701 -1.8150 21 1 2.7221 -0.1494 -1.8162 22 1 3.3111 -2.5731 -1.0956 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260763442.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:07 Heat of formation + Delta-G solvation = -103.975821 kcal Electronic energy + Delta-G solvation = -10232.975513 eV Core-core repulsion = 8173.214958 eV Total energy + Delta-G solvation = -2059.760555 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.04642 -38.21928 -35.27065 -35.10688 -32.08718 -27.54386 -26.55526 -23.05312 -22.44060 -19.53339 -17.98882 -17.13878 -16.94756 -16.52093 -15.52992 -14.94600 -14.49515 -14.01045 -13.71551 -13.22870 -12.83347 -12.56749 -12.30396 -12.16537 -11.77973 -11.46245 -10.90348 -10.67586 -10.06529 -8.20710 -6.48485 1.42666 1.46409 1.57094 1.93300 2.23877 2.37798 2.92467 3.41710 3.87700 4.41005 4.51793 4.79013 4.85252 5.08543 5.21226 5.56297 5.88207 6.01768 6.07255 6.55825 6.90071 7.29724 7.37210 8.81466 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.063226 B = 0.017296 C = 0.016742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.750966 B = 1618.439782 C = 1672.001626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.193 3.807 3 C -0.556 4.556 4 H 0.082 0.918 5 C 0.031 3.969 6 N -0.886 5.886 7 Si 0.966 3.034 8 H -0.257 1.257 9 H -0.272 1.272 10 H -0.290 1.290 11 C 0.085 3.915 12 N -0.722 5.722 13 C 0.626 3.374 14 O -0.608 6.608 15 O -0.346 6.346 16 H 0.063 0.937 17 H 0.078 0.922 18 H 0.037 0.963 19 H 0.266 0.734 20 H 0.108 0.892 21 H 0.098 0.902 22 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.405 -0.416 -8.552 8.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.159 3.841 3 C -0.593 4.593 4 H 0.100 0.900 5 C -0.174 4.174 6 N -0.522 5.522 7 Si 0.790 3.210 8 H -0.181 1.181 9 H -0.197 1.197 10 H -0.216 1.216 11 C -0.039 4.039 12 N -0.394 5.394 13 C 0.380 3.620 14 O -0.501 6.501 15 O -0.255 6.255 16 H 0.082 0.918 17 H 0.097 0.903 18 H 0.056 0.944 19 H 0.075 0.925 20 H 0.126 0.874 21 H 0.116 0.884 22 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -0.412 -0.515 -7.711 7.740 hybrid contribution 0.497 0.493 0.201 0.728 sum 0.085 -0.022 -7.510 7.510 Atomic orbital electron populations 1.21842 0.93785 0.99593 1.03705 1.21276 0.93740 0.90666 0.78450 1.21564 1.33507 0.94285 1.09958 0.90028 1.25943 0.93887 1.03047 0.94504 1.70097 1.34396 1.37093 1.10622 0.85396 0.78432 0.78899 0.78235 1.18101 1.19746 1.21606 1.23091 0.96866 0.87651 0.96284 1.45833 1.56123 1.32283 1.05171 1.19245 0.78308 0.80873 0.83553 1.90849 1.53302 1.46015 1.59944 1.87597 1.61972 1.37009 1.38933 0.91766 0.90292 0.94363 0.92474 0.87414 0.88423 0.71962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.66 8.55 71.98 0.62 -5.04 14 2 C 0.19 8.92 0.97 -11.17 -0.01 8.91 14 3 C -0.56 -27.84 8.33 25.60 0.21 -27.63 14 4 H 0.08 3.82 7.39 -2.91 -0.02 3.80 14 5 C 0.03 1.60 5.29 84.66 0.45 2.05 14 6 N -0.89 -49.38 11.08 21.45 0.24 -49.14 14 7 Si 0.97 40.76 29.54 68.60 2.03 42.78 14 8 H -0.26 -10.22 7.11 99.48 0.71 -9.52 14 9 H -0.27 -11.05 7.11 99.48 0.71 -10.34 14 10 H -0.29 -12.59 7.11 99.48 0.71 -11.88 14 11 C 0.08 2.91 7.35 86.64 0.64 3.55 14 12 N -0.72 -26.08 6.40 -590.44 -3.78 -29.86 14 13 C 0.63 30.76 9.16 129.91 1.19 31.95 14 14 O -0.61 -33.35 18.04 19.66 0.35 -33.00 14 15 O -0.35 -18.93 10.15 -47.22 -0.48 -19.41 14 16 H 0.06 3.22 6.14 -2.39 -0.01 3.20 14 17 H 0.08 2.94 8.14 -2.39 -0.02 2.92 14 18 H 0.04 1.46 8.14 -2.39 -0.02 1.45 14 19 H 0.27 14.08 8.31 -92.70 -0.77 13.31 14 20 H 0.11 2.91 7.73 -2.38 -0.02 2.90 14 21 H 0.10 3.05 7.46 -2.39 -0.02 3.03 14 22 H 0.44 12.21 8.96 -92.71 -0.83 11.38 14 Total: -1.00 -66.46 198.46 1.86 -64.60 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 0.41 Total: 10.24 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 3.09 Total: 13.79 kcal Atomic # 7 Polarization: -75.46 SS G_CDS: -3.54 Total: -79.00 kcal Atomic # 8 Polarization: -52.29 SS G_CDS: -0.12 Total: -52.41 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.78 kcal Total: -66.46 1.86 -64.60 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260763442.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.378 kcal (2) G-P(sol) polarization free energy of solvation -66.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds