Wall clock time and date at job start Mon Mar 30 2020 01:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 O 1.41461 * 124.16225 * 254.70231 * 10 9 7 12 12 C 1.44232 * 107.74629 * 161.10210 * 11 10 9 13 13 C 1.54604 * 102.46401 * 27.25394 * 12 11 10 14 14 C 1.34774 * 124.16744 * 74.99584 * 10 9 7 15 15 O 1.21288 * 126.23862 * 1.18530 * 14 10 9 16 16 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 17 17 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 18 18 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 19 19 H 1.09002 * 111.01471 * 268.93228 * 12 11 10 20 20 H 1.08994 * 110.80810 * 145.48459 * 12 11 10 21 21 H 1.08998 * 110.72972 * 216.28450 * 13 12 11 22 22 H 1.08997 * 110.72807 * 92.97508 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 8 2.4844 -4.4121 -1.1428 12 6 3.7432 -5.0766 -0.9100 13 6 3.7949 -5.1624 0.6328 14 6 2.9140 -4.0052 1.0652 15 8 2.8597 -3.5216 2.1762 16 1 -0.4850 0.8401 -0.0004 17 1 0.6242 -2.5609 0.8844 18 1 0.6244 -2.5529 -0.8956 19 1 4.5744 -4.4844 -1.2927 20 1 3.7432 -6.0723 -1.3532 21 1 4.8147 -5.0266 0.9928 22 1 3.3847 -6.1105 0.9804 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260859960.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:04 Heat of formation + Delta-G solvation = -25.633380 kcal Electronic energy + Delta-G solvation = -9896.561763 eV Core-core repulsion = 7840.198391 eV Total energy + Delta-G solvation = -2056.363372 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.65488 -36.62570 -33.61025 -31.56493 -30.63781 -27.16953 -23.65170 -22.44989 -19.78492 -16.84670 -16.28762 -16.20341 -15.17829 -14.58806 -13.81576 -13.49249 -13.11994 -12.76372 -12.04358 -11.76504 -11.50384 -10.97683 -10.78043 -10.48063 -10.24402 -9.65653 -9.10266 -8.52268 -7.71746 -6.12853 -4.18400 2.80541 3.21972 3.28535 3.35465 3.41823 4.38729 4.44304 4.87716 5.05263 5.18378 5.22589 5.62327 5.85491 5.95143 6.93998 7.13330 7.34595 7.82660 8.02580 8.18760 8.72249 8.90306 9.46484 10.95181 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.067707 B = 0.013824 C = 0.013500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.448935 B = 2025.005211 C = 2073.572292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.532 4.532 8 H 0.062 0.938 9 C 0.269 3.731 10 N -0.461 5.461 11 O -0.164 6.164 12 C 0.032 3.968 13 C -0.187 4.187 14 C 0.503 3.497 15 O -0.517 6.517 16 H 0.266 0.734 17 H 0.054 0.946 18 H 0.049 0.951 19 H 0.073 0.927 20 H 0.104 0.896 21 H 0.105 0.895 22 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.099 -8.113 -2.030 10.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.734 3.266 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.571 4.571 8 H 0.080 0.920 9 C 0.154 3.846 10 N -0.241 5.241 11 O -0.167 6.167 12 C -0.046 4.046 13 C -0.228 4.228 14 C 0.289 3.711 15 O -0.394 6.394 16 H 0.075 0.925 17 H 0.071 0.929 18 H 0.067 0.933 19 H 0.091 0.909 20 H 0.122 0.878 21 H 0.124 0.876 22 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.692 -7.682 -1.676 9.707 hybrid contribution 0.644 0.747 -0.169 1.001 sum 6.336 -6.934 -1.845 9.573 Atomic orbital electron populations 1.69938 1.06014 1.27324 1.50034 1.24928 0.94987 0.99356 0.94718 0.86305 0.79970 0.82693 0.77666 1.19680 1.20789 1.20691 1.21466 0.93717 0.90150 1.51769 0.92011 1.19586 0.86181 0.79543 0.99284 1.51156 1.43084 1.29536 1.00331 1.90956 1.38212 1.59469 1.28014 1.23739 0.87872 0.98271 0.94710 1.23051 1.02764 1.00397 0.96613 1.20609 0.81743 0.84247 0.84527 1.90736 1.67536 1.60769 1.20318 0.92475 0.92875 0.93284 0.90873 0.87762 0.87613 0.87660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.75 14 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 14 3 Si 0.91 22.04 29.54 -169.99 -5.02 17.02 14 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 14 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 14 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 14 7 C -0.53 -15.53 9.27 -34.44 -0.32 -15.84 14 8 H 0.06 1.82 7.81 -52.49 -0.41 1.41 14 9 C 0.27 7.32 5.98 -5.20 -0.03 7.29 14 10 N -0.46 -10.85 3.71 -61.10 -0.23 -11.07 14 11 O -0.16 -3.26 12.37 -11.40 -0.14 -3.40 14 12 C 0.03 0.44 8.15 38.00 0.31 0.75 14 13 C -0.19 -2.76 7.05 -26.54 -0.19 -2.95 14 14 C 0.50 11.08 8.09 -10.48 -0.08 11.00 14 15 O -0.52 -13.32 17.81 5.55 0.10 -13.22 14 16 H 0.27 7.35 8.31 -40.82 -0.34 7.01 14 17 H 0.05 1.53 8.14 -51.93 -0.42 1.11 14 18 H 0.05 1.35 8.14 -51.93 -0.42 0.93 14 19 H 0.07 0.96 8.14 -51.93 -0.42 0.53 14 20 H 0.10 1.04 8.14 -51.93 -0.42 0.62 14 21 H 0.11 1.33 8.14 -51.93 -0.42 0.90 14 22 H 0.11 1.29 8.14 -51.93 -0.42 0.87 14 LS Contribution 207.00 15.07 3.12 3.12 Total: -1.00 -32.83 207.00 -3.92 -36.75 By element: Atomic # 1 Polarization: -3.32 SS G_CDS: -2.08 Total: -5.40 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -0.41 Total: 1.95 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.51 Total: -36.82 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.04 Total: -16.63 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 3.12 Total: 3.12 kcal Total: -32.83 -3.92 -36.75 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260859960.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.121 kcal (2) G-P(sol) polarization free energy of solvation -32.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds