Wall clock time and date at job start Mon Mar 30 2020 01:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00091 * 2 1 4 4 H 1.48500 * 109.47023 * 269.99875 * 3 2 1 5 5 H 1.48495 * 109.47217 * 29.99997 * 3 2 1 6 6 H 1.48501 * 109.46817 * 150.00044 * 3 2 1 7 7 C 1.37875 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00591 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00045 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.47523 * 59.99880 * 9 7 2 11 11 C 1.53006 * 109.47053 * 300.00341 * 9 7 2 12 12 N 1.46898 * 109.47006 * 184.99757 * 11 9 7 13 13 N 1.46897 * 109.47459 * 179.97438 * 9 7 2 14 14 C 1.47478 * 111.00221 * 199.02582 * 13 9 7 15 15 C 1.53511 * 87.93079 * 138.70520 * 14 13 9 16 16 C 1.47471 * 111.00360 * 295.00003 * 13 9 7 17 17 H 0.97002 * 119.99974 * 0.02562 * 1 2 3 18 18 H 1.09001 * 109.47002 * 304.99539 * 11 9 7 19 19 H 1.08993 * 109.46955 * 64.99976 * 11 9 7 20 20 H 1.00898 * 110.99876 * 179.97438 * 12 11 9 21 21 H 1.00895 * 111.00438 * 303.95603 * 12 11 9 22 22 H 1.09000 * 113.48277 * 253.46884 * 14 13 9 23 23 H 1.09000 * 113.47442 * 23.94288 * 14 13 9 24 24 H 1.09004 * 114.17397 * 220.32785 * 15 14 13 25 25 H 1.09003 * 114.16903 * 87.62416 * 15 14 13 26 26 H 1.08997 * 113.47693 * 336.06495 * 16 13 9 27 27 H 1.09009 * 113.47690 * 106.46521 * 16 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6246 -2.5571 -0.8897 11 6 0.3708 -2.5799 1.2495 12 7 -0.2715 -3.8995 1.3114 13 7 2.2055 -3.6157 0.0005 14 6 1.5596 -4.8632 -0.4483 15 6 2.8308 -5.1660 -1.2539 16 6 2.9912 -3.6394 -1.2472 17 1 -0.4850 0.8401 -0.0004 18 1 0.9857 -2.4331 2.1374 19 1 -0.3945 -1.8051 1.2053 20 1 -0.8584 -3.9780 2.1283 21 1 -0.7957 -4.0864 0.4698 22 1 1.3777 -5.5729 0.3588 23 1 0.6804 -4.6973 -1.0708 24 1 2.6437 -5.5909 -2.2401 25 1 3.5989 -5.6980 -0.6924 26 1 2.4941 -3.1469 -2.0828 27 1 4.0225 -3.3107 -1.1173 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260861553.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:22 Heat of formation + Delta-G solvation = 13.391569 kcal Electronic energy + Delta-G solvation = -10265.468583 eV Core-core repulsion = 8444.349217 eV Total energy + Delta-G solvation = -1821.119367 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.63445 -36.17689 -34.19055 -31.06727 -27.43525 -26.39944 -25.46940 -21.85764 -20.51262 -18.60056 -17.17025 -16.60975 -16.29454 -15.75000 -14.91654 -14.55335 -14.14367 -13.76974 -13.21037 -12.87986 -12.68659 -12.60615 -12.34317 -11.81243 -11.43252 -11.20172 -10.94421 -10.62999 -9.39731 -9.29104 -8.17417 -6.30912 1.38041 1.39244 1.50462 2.37999 3.08364 3.56366 3.78635 4.08094 4.26096 4.65094 4.74136 4.77249 4.82935 4.98439 5.04710 5.13831 5.31971 5.43844 5.45843 5.67460 5.92406 6.20416 6.46324 6.61577 6.74045 6.90860 7.38616 8.86437 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.053963 B = 0.017175 C = 0.013816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.752633 B = 1629.878726 C = 2026.099321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.014 3.986 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.527 4.527 8 H 0.052 0.948 9 C 0.195 3.805 10 H -0.030 1.030 11 C 0.086 3.914 12 N -0.839 5.839 13 N -0.480 5.480 14 C 0.023 3.977 15 C -0.134 4.134 16 C 0.004 3.996 17 H 0.263 0.737 18 H 0.033 0.967 19 H 0.034 0.966 20 H 0.335 0.665 21 H 0.331 0.669 22 H 0.084 0.916 23 H 0.045 0.955 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.044 0.956 27 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.505 -6.187 -1.459 6.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.185 4.185 3 Si 0.787 3.213 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.566 4.566 8 H 0.070 0.930 9 C 0.086 3.914 10 H -0.012 1.012 11 C -0.045 4.045 12 N -0.368 5.368 13 N -0.203 5.203 14 C -0.107 4.107 15 C -0.172 4.172 16 C -0.126 4.126 17 H 0.072 0.928 18 H 0.051 0.949 19 H 0.052 0.948 20 H 0.147 0.853 21 H 0.142 0.858 22 H 0.103 0.897 23 H 0.063 0.937 24 H 0.106 0.894 25 H 0.116 0.884 26 H 0.062 0.938 27 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.408 -6.265 -0.727 6.751 hybrid contribution -1.233 1.826 -0.776 2.336 sum 1.175 -4.439 -1.502 4.831 Atomic orbital electron populations 1.70006 1.07108 1.27443 1.51230 1.25738 0.95790 1.02535 0.94477 0.85499 0.78613 0.78895 0.78319 1.19953 1.20536 1.19537 1.21354 0.93122 0.91309 1.50782 0.93000 1.19552 0.90065 0.89862 0.91905 1.01225 1.21575 0.96602 0.88419 0.97880 1.58988 1.38683 1.31942 1.07174 1.68778 1.16999 1.03116 1.31373 1.23463 0.95345 0.94048 0.97806 1.23182 0.98366 0.94683 1.00934 1.23496 0.99324 0.96913 0.92851 0.92812 0.94880 0.94819 0.85315 0.85755 0.89749 0.93655 0.89447 0.88437 0.93812 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.92 11.37 21.45 0.24 -52.68 15 2 C 0.01 0.77 5.30 84.65 0.45 1.22 15 3 Si 0.96 44.22 29.54 68.60 2.03 46.25 15 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 15 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 15 7 C -0.53 -29.98 8.17 25.60 0.21 -29.77 15 8 H 0.05 2.99 7.63 -2.91 -0.02 2.97 15 9 C 0.19 10.20 1.49 44.17 0.07 10.27 15 10 H -0.03 -1.70 7.55 -2.39 -0.02 -1.72 15 11 C 0.09 4.29 6.18 86.31 0.53 4.83 15 12 N -0.84 -32.92 7.58 -186.72 -1.42 -34.33 15 13 N -0.48 -21.90 6.11 -907.12 -5.54 -27.44 15 14 C 0.02 0.84 5.70 83.57 0.48 1.32 15 15 C -0.13 -4.17 8.47 30.94 0.26 -3.91 15 16 C 0.00 0.15 6.90 83.57 0.58 0.72 15 17 H 0.26 14.36 8.31 -92.71 -0.77 13.59 15 18 H 0.03 1.73 8.14 -2.39 -0.02 1.71 15 19 H 0.03 1.84 6.22 -2.39 -0.01 1.83 15 20 H 0.34 11.39 9.08 -89.70 -0.81 10.58 15 21 H 0.33 12.39 8.26 -89.70 -0.74 11.65 15 22 H 0.08 3.01 7.86 -2.39 -0.02 2.99 15 23 H 0.05 1.71 7.19 -2.39 -0.02 1.70 15 24 H 0.09 2.26 8.14 -2.39 -0.02 2.24 15 25 H 0.10 2.75 8.14 -2.39 -0.02 2.73 15 26 H 0.04 1.88 7.85 -2.39 -0.02 1.86 15 27 H 0.07 2.63 8.14 -2.38 -0.02 2.61 15 Total: -1.00 -61.18 220.65 -2.51 -63.69 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -0.39 Total: 19.84 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: 2.57 Total: -15.34 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -6.71 Total: -114.45 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -61.18 -2.51 -63.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260861553.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.084 kcal (2) G-P(sol) polarization free energy of solvation -61.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds