Wall clock time and date at job start Mon Mar 30 2020 01:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99901 * 2 1 4 4 H 1.48498 * 109.47322 * 239.99380 * 3 2 1 5 5 H 1.48499 * 109.47075 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47253 * 119.99205 * 3 2 1 7 7 C 1.37867 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00105 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00157 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.46672 * 305.25378 * 9 7 2 11 11 C 1.52999 * 109.46730 * 65.25100 * 9 7 2 12 12 N 1.46905 * 109.46681 * 175.00027 * 11 9 7 13 13 N 1.46895 * 109.47030 * 185.24929 * 9 7 2 14 14 C 1.47478 * 111.00725 * 312.40399 * 13 9 7 15 15 C 1.53505 * 87.93560 * 138.70385 * 14 13 9 16 16 C 1.47478 * 111.00126 * 48.37964 * 13 9 7 17 17 H 0.96999 * 120.00268 * 0.02562 * 1 2 3 18 18 H 1.09005 * 109.47221 * 55.00238 * 11 9 7 19 19 H 1.08997 * 109.47223 * 295.00321 * 11 9 7 20 20 H 1.00903 * 110.99532 * 180.02562 * 12 11 9 21 21 H 1.00897 * 110.99947 * 303.94882 * 12 11 9 22 22 H 1.08993 * 113.47722 * 253.47659 * 14 13 9 23 23 H 1.09009 * 113.47058 * 23.93518 * 14 13 9 24 24 H 1.09002 * 114.17065 * 220.33301 * 15 14 13 25 25 H 1.08994 * 114.34570 * 87.63791 * 15 14 13 26 26 H 1.09001 * 113.47838 * 336.05398 * 16 13 9 27 27 H 1.08998 * 113.48351 * 106.46582 * 16 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6966 1.2126 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.5554 -2.5170 0.8395 11 6 0.4736 -2.6391 -1.3098 12 7 -0.1641 -3.9615 -1.3618 13 7 2.2006 -3.6127 0.1279 14 6 3.3278 -3.4562 -0.8102 15 6 4.2582 -3.9271 0.3163 16 6 3.1542 -3.3711 1.2266 17 1 -0.4850 0.8400 -0.0004 18 1 1.1579 -2.5323 -2.1515 19 1 -0.2914 -1.8645 -1.3629 20 1 -0.6838 -4.0788 -2.2187 21 1 0.5180 -4.6965 -1.2496 22 1 3.2875 -4.1427 -1.6558 23 1 3.5005 -2.4233 -1.1128 24 1 5.2006 -3.3824 0.3738 25 1 4.3819 -5.0085 0.3742 26 1 3.2808 -2.3156 1.4675 27 1 2.9664 -3.9848 2.1075 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260861554.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:23 Heat of formation + Delta-G solvation = 17.012910 kcal Electronic energy + Delta-G solvation = -10351.276861 eV Core-core repulsion = 8530.314528 eV Total energy + Delta-G solvation = -1820.962334 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.87639 -36.00828 -34.21935 -30.90535 -27.45376 -26.57839 -25.52256 -21.90621 -20.69455 -18.21685 -17.38933 -16.52344 -16.14522 -15.81127 -15.48290 -14.41513 -13.95567 -13.53230 -13.37505 -12.92174 -12.73827 -12.44863 -11.99097 -11.77604 -11.63300 -11.25304 -11.09338 -10.58132 -9.37261 -9.30905 -8.13180 -6.31662 1.39586 1.39829 1.47705 2.37968 3.10742 3.55999 3.80190 4.12859 4.30722 4.59360 4.75352 4.80806 4.91488 4.96319 5.01886 5.06406 5.23091 5.49045 5.51435 5.85317 6.01195 6.03254 6.32261 6.57419 6.84720 6.97715 7.38730 8.89190 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.042893 B = 0.020540 C = 0.015373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.632882 B = 1362.872023 C = 1820.920669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.019 3.981 3 Si 0.954 3.046 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.558 4.558 8 H 0.071 0.929 9 C 0.189 3.811 10 H 0.001 0.999 11 C 0.094 3.906 12 N -0.849 5.849 13 N -0.486 5.486 14 C -0.006 4.006 15 C -0.127 4.127 16 C -0.006 4.006 17 H 0.263 0.737 18 H -0.005 1.005 19 H 0.057 0.943 20 H 0.333 0.667 21 H 0.343 0.657 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.100 0.900 26 H 0.065 0.935 27 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.715 -4.260 -1.711 8.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.182 4.182 3 Si 0.780 3.220 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.597 4.597 8 H 0.089 0.911 9 C 0.080 3.920 10 H 0.019 0.981 11 C -0.037 4.037 12 N -0.379 5.379 13 N -0.208 5.208 14 C -0.135 4.135 15 C -0.164 4.164 16 C -0.135 4.135 17 H 0.072 0.928 18 H 0.013 0.987 19 H 0.075 0.925 20 H 0.144 0.856 21 H 0.156 0.844 22 H 0.090 0.910 23 H 0.083 0.917 24 H 0.099 0.901 25 H 0.118 0.882 26 H 0.083 0.917 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.686 -4.487 -1.072 7.322 hybrid contribution 0.864 1.784 -0.796 2.136 sum 6.550 -2.703 -1.868 7.328 Atomic orbital electron populations 1.70073 1.07399 1.27554 1.50192 1.25766 0.95556 1.02557 0.94326 0.85666 0.78411 0.79022 0.78925 1.19436 1.21157 1.19537 1.21915 0.93676 0.92126 1.51972 0.91084 1.19405 0.91371 0.87889 0.93337 0.98095 1.21545 0.96019 0.89932 0.96201 1.58710 1.32228 1.04534 1.42474 1.68961 1.08044 1.38999 1.04838 1.23719 0.92342 1.00642 0.96792 1.23042 0.96484 1.01730 0.95175 1.23712 0.93251 1.00504 0.96050 0.92834 0.98650 0.92456 0.85564 0.84362 0.91036 0.91651 0.90090 0.88168 0.91685 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.11 11.76 21.44 0.25 -52.86 15 2 C 0.02 1.01 5.33 84.65 0.45 1.46 15 3 Si 0.95 42.75 29.54 68.60 2.03 44.77 15 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 15 5 H -0.29 -12.73 7.11 99.48 0.71 -12.02 15 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 7 C -0.56 -29.75 6.14 25.60 0.16 -29.60 15 8 H 0.07 3.64 5.09 -2.91 -0.01 3.63 15 9 C 0.19 9.77 2.24 44.17 0.10 9.87 15 10 H 0.00 0.06 8.14 -2.39 -0.02 0.04 15 11 C 0.09 4.67 6.00 86.30 0.52 5.19 15 12 N -0.85 -35.61 9.62 -186.71 -1.80 -37.40 15 13 N -0.49 -21.03 5.50 -907.02 -4.98 -26.01 15 14 C -0.01 -0.22 6.76 83.57 0.56 0.35 15 15 C -0.13 -3.93 8.47 30.94 0.26 -3.66 15 16 C -0.01 -0.23 7.47 83.58 0.62 0.39 15 17 H 0.26 14.56 8.31 -92.71 -0.77 13.79 15 18 H 0.00 -0.23 7.74 -2.38 -0.02 -0.25 15 19 H 0.06 3.20 6.62 -2.39 -0.02 3.19 15 20 H 0.33 11.95 9.08 -89.69 -0.81 11.13 15 21 H 0.34 13.52 8.14 -89.70 -0.73 12.79 15 22 H 0.07 2.44 8.14 -2.39 -0.02 2.42 15 23 H 0.07 2.76 5.59 -2.38 -0.01 2.74 15 24 H 0.08 2.21 8.14 -2.39 -0.02 2.19 15 25 H 0.10 2.67 8.14 -2.39 -0.02 2.65 15 26 H 0.06 2.83 5.85 -2.39 -0.01 2.82 15 27 H 0.07 2.56 8.14 -2.39 -0.02 2.54 15 Total: -1.00 -59.64 217.26 -2.19 -61.83 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: -0.37 Total: 25.67 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: 2.68 Total: -16.00 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -6.53 Total: -116.27 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -59.64 -2.19 -61.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260861554.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.842 kcal (2) G-P(sol) polarization free energy of solvation -59.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds