Wall clock time and date at job start Mon Mar 30 2020 02:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.43638 * 305.70119 * 10 9 7 12 12 C 1.54097 * 110.48436 * 68.24412 * 10 9 7 13 13 O 1.43744 * 107.29142 * 116.64720 * 12 10 9 14 14 C 1.44380 * 106.97509 * 26.51159 * 13 12 10 15 15 C 1.54809 * 110.48791 * 183.15543 * 10 9 7 16 16 H 1.09004 * 110.90466 * 338.64236 * 15 10 9 17 17 N 1.46896 * 110.90644 * 102.24371 * 15 10 9 18 18 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 19 19 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 20 20 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 21 21 H 1.09004 * 109.87906 * 236.06931 * 12 10 9 22 22 H 1.08997 * 109.88092 * 357.22598 * 12 10 9 23 23 H 1.08997 * 110.61925 * 78.44512 * 14 13 12 24 24 H 1.09004 * 110.61953 * 201.27654 * 14 13 12 25 25 H 1.00905 * 110.99691 * 179.97438 * 17 15 10 26 26 H 1.00903 * 111.00386 * 303.95602 * 17 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9457 -3.5640 -0.8289 12 6 3.0025 -3.7242 1.3412 13 8 2.6604 -4.9720 1.9676 14 6 2.3090 -5.8915 0.9113 15 6 1.4969 -5.0149 -0.0793 16 1 0.4641 -4.9082 0.2527 17 7 1.5540 -5.5661 -1.4397 18 1 -0.4850 -0.8401 -0.0004 19 1 0.6241 -2.5566 0.8903 20 1 0.6247 -2.5571 -0.8897 21 1 4.0769 -3.6815 1.1625 22 1 2.6973 -2.8940 1.9781 23 1 3.2048 -6.2829 0.4293 24 1 1.6965 -6.7055 1.2991 25 1 1.0669 -6.4481 -1.4932 26 1 1.1875 -4.9088 -2.1119 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260866313.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:22 Heat of formation + Delta-G solvation = -65.060826 kcal Electronic energy + Delta-G solvation = -10136.506986 eV Core-core repulsion = 8214.267006 eV Total energy + Delta-G solvation = -1922.239980 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.04460 -34.36719 -33.36847 -30.75890 -27.35442 -25.98768 -23.26004 -21.27889 -19.63807 -16.77878 -16.04619 -15.47130 -15.10805 -14.35702 -13.74715 -13.54414 -12.84882 -12.76409 -11.71565 -11.49824 -11.13724 -10.76879 -10.47555 -10.15266 -10.01174 -9.77654 -9.10109 -8.56437 -8.52023 -8.35662 -6.39585 -4.09415 3.42740 3.45958 3.61609 4.35618 4.51955 4.78804 5.15788 5.34894 5.40715 5.57681 5.79030 5.92073 6.07611 6.20115 6.48210 6.59682 6.83817 7.17804 7.26577 7.37628 7.55748 7.61534 8.15372 8.42267 8.84183 9.63015 11.00674 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.069520 B = 0.012585 C = 0.011612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.662645 B = 2224.294785 C = 2410.737190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 1.071 2.929 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.601 4.601 8 H 0.051 0.949 9 C 0.018 3.982 10 C -0.101 4.101 11 H 0.080 0.920 12 C 0.060 3.940 13 O -0.387 6.387 14 C 0.055 3.945 15 C 0.051 3.949 16 H 0.049 0.951 17 N -0.838 5.838 18 H 0.268 0.732 19 H 0.010 0.990 20 H 0.006 0.994 21 H 0.048 0.952 22 H 0.095 0.905 23 H 0.063 0.937 24 H 0.080 0.920 25 H 0.334 0.666 26 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.062 -8.269 -0.565 8.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.189 4.189 3 Si 0.899 3.101 4 H -0.214 1.214 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.639 4.639 8 H 0.069 0.931 9 C -0.019 4.019 10 C -0.120 4.120 11 H 0.098 0.902 12 C -0.017 4.017 13 O -0.306 6.306 14 C -0.023 4.023 15 C -0.060 4.060 16 H 0.067 0.933 17 N -0.369 5.369 18 H 0.078 0.922 19 H 0.028 0.972 20 H 0.024 0.976 21 H 0.066 0.934 22 H 0.113 0.887 23 H 0.081 0.919 24 H 0.098 0.902 25 H 0.146 0.854 26 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.672 -6.665 -0.214 7.613 hybrid contribution -0.874 -1.540 -0.276 1.792 sum 2.798 -8.205 -0.490 8.683 Atomic orbital electron populations 1.70765 1.06925 1.30540 1.46628 1.25864 0.96528 1.02805 0.93692 0.83513 0.74684 0.75061 0.76813 1.21391 1.21432 1.21007 1.22043 0.94335 0.91775 1.55767 0.93107 1.19304 0.94004 0.92683 0.95954 1.22519 0.98467 0.93647 0.97335 0.90202 1.23245 0.97816 0.85956 0.94649 1.88803 1.88499 1.22980 1.30317 1.23465 0.98191 0.92490 0.88118 1.23126 0.98284 0.95644 0.88988 0.93263 1.58671 1.64443 1.08130 1.05617 0.92182 0.97208 0.97578 0.93375 0.88675 0.91909 0.90222 0.85450 0.83918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.93 13.65 55.43 0.76 -27.17 15 2 C 0.01 0.43 5.46 -17.82 -0.10 0.33 15 3 Si 1.07 25.32 29.90 -169.99 -5.08 20.24 15 4 H -0.29 -6.55 7.11 56.52 0.40 -6.15 15 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 15 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 7 C -0.60 -16.90 8.46 -34.44 -0.29 -17.20 15 8 H 0.05 1.41 7.73 -52.48 -0.41 1.00 15 9 C 0.02 0.45 3.49 -27.88 -0.10 0.35 15 10 C -0.10 -2.13 2.71 -89.09 -0.24 -2.37 15 11 H 0.08 1.74 8.06 -51.93 -0.42 1.32 15 12 C 0.06 1.23 7.06 37.73 0.27 1.49 15 13 O -0.39 -7.64 11.52 -35.23 -0.41 -8.04 15 14 C 0.05 0.91 7.42 38.33 0.28 1.19 15 15 C 0.05 0.91 3.84 -65.59 -0.25 0.65 15 16 H 0.05 0.91 7.87 -51.93 -0.41 0.50 15 17 N -0.84 -12.50 9.33 -2.87 -0.03 -12.53 15 18 H 0.27 8.17 7.22 -40.82 -0.29 7.88 15 19 H 0.01 0.26 8.01 -51.93 -0.42 -0.15 15 20 H 0.01 0.16 8.01 -51.93 -0.42 -0.26 15 21 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 22 H 0.10 2.12 7.40 -51.93 -0.38 1.73 15 23 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 24 H 0.08 1.12 8.14 -51.93 -0.42 0.70 15 25 H 0.33 4.01 9.08 -39.29 -0.36 3.66 15 26 H 0.35 5.21 9.03 -39.29 -0.35 4.86 15 LS Contribution 220.99 15.07 3.33 3.33 Total: -1.00 -30.56 220.99 -5.38 -35.93 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -3.52 Total: 3.78 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -0.43 Total: -15.54 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.73 Total: -39.70 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -0.41 Total: -8.04 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.08 Total: 20.24 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -30.56 -5.38 -35.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260866313.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.127 kcal (2) G-P(sol) polarization free energy of solvation -30.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds