Wall clock time and date at job start Mon Mar 30 2020 02:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.43638 * 305.70119 * 10 9 7 12 12 C 1.54097 * 110.48436 * 68.24412 * 10 9 7 13 13 O 1.43744 * 107.29142 * 116.64720 * 12 10 9 14 14 C 1.44380 * 106.97509 * 26.51159 * 13 12 10 15 15 C 1.54809 * 110.48791 * 183.15543 * 10 9 7 16 16 H 1.09004 * 110.90466 * 338.64236 * 15 10 9 17 17 N 1.46896 * 110.90644 * 102.24371 * 15 10 9 18 18 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 19 19 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 20 20 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 21 21 H 1.09004 * 109.87906 * 236.06931 * 12 10 9 22 22 H 1.08997 * 109.88092 * 357.22598 * 12 10 9 23 23 H 1.08997 * 110.61925 * 78.44512 * 14 13 12 24 24 H 1.09004 * 110.61953 * 201.27654 * 14 13 12 25 25 H 1.00905 * 110.99691 * 179.97438 * 17 15 10 26 26 H 1.00903 * 111.00386 * 303.95602 * 17 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9457 -3.5640 -0.8289 12 6 3.0025 -3.7242 1.3412 13 8 2.6604 -4.9720 1.9676 14 6 2.3090 -5.8915 0.9113 15 6 1.4969 -5.0149 -0.0793 16 1 0.4641 -4.9082 0.2527 17 7 1.5540 -5.5661 -1.4397 18 1 -0.4850 -0.8401 -0.0004 19 1 0.6241 -2.5566 0.8903 20 1 0.6247 -2.5571 -0.8897 21 1 4.0769 -3.6815 1.1625 22 1 2.6973 -2.8940 1.9781 23 1 3.2048 -6.2829 0.4293 24 1 1.6965 -6.7055 1.2991 25 1 1.0669 -6.4481 -1.4932 26 1 1.1875 -4.9088 -2.1119 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260866313.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:22 Heat of formation + Delta-G solvation = -88.347930 kcal Electronic energy + Delta-G solvation = -10137.516790 eV Core-core repulsion = 8214.267006 eV Total energy + Delta-G solvation = -1923.249784 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.58909 -36.16407 -35.09034 -32.59609 -28.71220 -27.95343 -25.26925 -22.87615 -21.28708 -18.89699 -17.57690 -17.01937 -16.44159 -15.84167 -15.65093 -15.05647 -14.83626 -14.55612 -13.64589 -13.00982 -12.96722 -12.60004 -12.02343 -11.95520 -11.80924 -11.62214 -10.74775 -10.59708 -10.53413 -9.80362 -8.70327 -6.41147 1.52348 1.61071 1.78624 2.55267 2.92533 3.14278 3.43077 3.65741 3.91955 4.01712 4.27657 4.42917 4.66861 4.76689 4.82879 4.83680 5.07727 5.13731 5.39100 5.78748 5.96964 6.10106 6.15664 6.51018 6.54882 7.40453 8.70092 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.069520 B = 0.012585 C = 0.011612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.662645 B = 2224.294785 C = 2410.737190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.040 4.040 3 Si 1.119 2.881 4 H -0.273 1.273 5 H -0.268 1.268 6 H -0.283 1.283 7 C -0.612 4.612 8 H 0.053 0.947 9 C 0.024 3.976 10 C -0.098 4.098 11 H 0.076 0.924 12 C 0.065 3.935 13 O -0.400 6.400 14 C 0.057 3.943 15 C 0.058 3.942 16 H 0.038 0.962 17 N -0.831 5.831 18 H 0.254 0.746 19 H -0.015 1.015 20 H -0.010 1.010 21 H 0.065 0.935 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.110 0.890 25 H 0.354 0.646 26 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.215 -8.972 -0.772 9.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.237 4.237 3 Si 0.940 3.060 4 H -0.199 1.199 5 H -0.192 1.192 6 H -0.209 1.209 7 C -0.649 4.649 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.117 4.117 11 H 0.094 0.906 12 C -0.012 4.012 13 O -0.319 6.319 14 C -0.020 4.020 15 C -0.054 4.054 16 H 0.056 0.944 17 N -0.364 5.364 18 H 0.063 0.937 19 H 0.003 0.997 20 H 0.008 0.992 21 H 0.083 0.917 22 H 0.088 0.912 23 H 0.095 0.905 24 H 0.128 0.872 25 H 0.168 0.832 26 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.825 -7.416 -0.425 8.858 hybrid contribution -1.258 -1.398 -0.226 1.895 sum 3.567 -8.814 -0.651 9.531 Atomic orbital electron populations 1.70903 1.08012 1.29753 1.48918 1.27425 0.96584 1.06918 0.92748 0.82910 0.74248 0.71036 0.77792 1.19867 1.19223 1.20901 1.22438 0.94715 0.92997 1.54781 0.92823 1.19170 0.94295 0.93964 0.93870 1.22370 0.97694 0.93950 0.97703 0.90557 1.23070 0.98543 0.85997 0.93601 1.88786 1.88658 1.22891 1.31533 1.23671 0.99004 0.92190 0.87131 1.22957 0.97411 0.94141 0.90871 0.94395 1.58625 1.64866 1.08938 1.03946 0.93666 0.99672 0.99183 0.91701 0.91177 0.90494 0.87178 0.83186 0.83954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.44 13.65 21.45 0.29 -58.15 15 2 C -0.04 -2.29 5.46 84.65 0.46 -1.83 15 3 Si 1.12 50.34 29.90 68.60 2.05 52.39 15 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 15 5 H -0.27 -11.05 7.11 99.48 0.71 -10.34 15 6 H -0.28 -12.64 7.11 99.48 0.71 -11.94 15 7 C -0.61 -34.63 8.46 25.60 0.22 -34.41 15 8 H 0.05 2.95 7.73 -2.91 -0.02 2.93 15 9 C 0.02 1.25 3.49 29.85 0.10 1.35 15 10 C -0.10 -4.09 2.71 -9.81 -0.03 -4.12 15 11 H 0.08 3.24 8.06 -2.39 -0.02 3.22 15 12 C 0.06 2.60 7.06 72.35 0.51 3.11 15 13 O -0.40 -15.06 11.52 -148.98 -1.72 -16.77 15 14 C 0.06 1.71 7.42 72.74 0.54 2.25 15 15 C 0.06 1.97 3.84 46.30 0.18 2.15 15 16 H 0.04 1.37 7.87 -2.39 -0.02 1.35 15 17 N -0.83 -22.95 9.33 -162.99 -1.52 -24.47 15 18 H 0.25 16.03 7.22 -92.71 -0.67 15.36 15 19 H -0.01 -0.85 8.01 -2.39 -0.02 -0.87 15 20 H -0.01 -0.55 8.01 -2.38 -0.02 -0.57 15 21 H 0.06 2.38 8.14 -2.38 -0.02 2.36 15 22 H 0.07 3.15 7.40 -2.39 -0.02 3.13 15 23 H 0.08 2.15 8.14 -2.39 -0.02 2.13 15 24 H 0.11 2.68 8.14 -2.39 -0.02 2.66 15 25 H 0.35 7.48 9.08 -89.69 -0.81 6.67 15 26 H 0.35 9.89 9.03 -89.69 -0.81 9.08 15 Total: -1.00 -64.95 220.99 0.74 -64.21 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -0.35 Total: 14.28 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 1.98 Total: -31.49 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -1.23 Total: -82.62 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -1.72 Total: -16.77 kcal Atomic # 14 Polarization: 50.34 SS G_CDS: 2.05 Total: 52.39 kcal Total: -64.95 0.74 -64.21 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260866313.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.138 kcal (2) G-P(sol) polarization free energy of solvation -64.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds