Wall clock time and date at job start Mon Mar 30 2020 02:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 H 1.08996 * 110.45724 * 303.84935 * 10 9 7 12 12 C 1.54479 * 110.51093 * 66.45470 * 10 9 7 13 13 O 1.44426 * 104.80366 * 142.62728 * 12 10 9 14 14 C 1.44421 * 105.27152 * 319.48557 * 13 12 10 15 15 C 1.54477 * 104.80477 * 40.51426 * 14 13 12 16 16 H 1.08999 * 110.50799 * 94.66510 * 15 14 13 17 17 N 1.46900 * 110.50955 * 217.37351 * 15 14 13 18 18 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 19 19 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 20 20 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 21 21 H 1.08999 * 110.37268 * 261.45705 * 12 10 9 22 22 H 1.08999 * 110.37458 * 23.78875 * 12 10 9 23 23 H 1.09000 * 110.37356 * 159.34873 * 14 13 12 24 24 H 1.09006 * 110.37317 * 281.67989 * 14 13 12 25 25 H 1.00895 * 111.00492 * 294.64123 * 17 15 14 26 26 H 1.00903 * 111.00241 * 58.59647 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9252 -3.5821 -0.8487 12 6 3.0363 -3.6980 1.3259 13 8 3.1920 -5.1024 1.6249 14 6 1.9250 -5.7064 1.2847 15 6 1.4973 -5.0138 -0.0282 16 1 1.8076 -5.6044 -0.8902 17 7 0.0444 -4.7979 -0.0466 18 1 -0.4850 0.8401 0.0004 19 1 0.6247 -2.5571 0.8897 20 1 0.6240 -2.5568 -0.8903 21 1 4.0110 -3.2267 1.1993 22 1 2.4739 -3.2016 2.1167 23 1 2.0458 -6.7781 1.1265 24 1 1.1920 -5.5182 2.0693 25 1 -0.4516 -5.6763 -0.0648 26 1 -0.2474 -4.2341 0.7377 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260866316.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:23 Heat of formation + Delta-G solvation = -54.091564 kcal Electronic energy + Delta-G solvation = -10207.252914 eV Core-core repulsion = 8285.488597 eV Total energy + Delta-G solvation = -1921.764317 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.11134 -34.30559 -32.88740 -30.63300 -27.10094 -26.34594 -23.16934 -21.78811 -18.75680 -17.02225 -15.65214 -15.22035 -14.86051 -14.43712 -14.29826 -13.17882 -12.55740 -12.18927 -11.70863 -11.54028 -11.15123 -10.82309 -10.47409 -10.40338 -9.81035 -9.30029 -9.19775 -8.95962 -8.33139 -8.12999 -5.97010 -3.99366 3.33002 3.39678 3.42896 4.43837 4.49139 5.16953 5.21999 5.30353 5.39251 5.53081 5.83923 5.96377 6.06965 6.31548 6.51993 6.76406 6.89066 7.31665 7.64676 7.70850 7.86160 7.96729 8.07222 8.46248 9.08359 9.64298 11.13590 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.070176 B = 0.013433 C = 0.011832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.899723 B = 2083.954188 C = 2365.803402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.274 1.274 6 H -0.287 1.287 7 C -0.524 4.524 8 H 0.053 0.947 9 C 0.044 3.956 10 C -0.110 4.110 11 H 0.071 0.929 12 C 0.054 3.946 13 O -0.390 6.390 14 C 0.012 3.988 15 C 0.060 3.940 16 H 0.082 0.918 17 N -0.827 5.827 18 H 0.259 0.741 19 H 0.013 0.987 20 H 0.035 0.965 21 H 0.085 0.915 22 H 0.062 0.938 23 H 0.079 0.921 24 H 0.050 0.950 25 H 0.327 0.673 26 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.906 -7.932 1.738 8.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.199 1.199 6 H -0.213 1.213 7 C -0.562 4.562 8 H 0.071 0.929 9 C 0.007 3.993 10 C -0.129 4.129 11 H 0.090 0.910 12 C -0.022 4.022 13 O -0.308 6.308 14 C -0.067 4.067 15 C -0.052 4.052 16 H 0.101 0.899 17 N -0.358 5.358 18 H 0.069 0.931 19 H 0.031 0.969 20 H 0.054 0.946 21 H 0.104 0.896 22 H 0.081 0.919 23 H 0.097 0.903 24 H 0.068 0.932 25 H 0.139 0.861 26 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.071 -7.534 1.127 7.894 hybrid contribution 0.276 0.559 0.866 1.067 sum 2.347 -6.975 1.993 7.624 Atomic orbital electron populations 1.69971 1.05947 1.26449 1.50724 1.25001 0.94815 0.99087 0.95410 0.86651 0.79911 0.83750 0.78021 1.20768 1.19937 1.21265 1.21311 0.92938 0.91286 1.50691 0.92886 1.18930 0.92968 0.89390 0.98049 1.22670 0.98251 0.95127 0.96875 0.91020 1.23567 1.00923 0.80721 0.96951 1.89016 1.32650 1.22139 1.87043 1.24319 0.87150 0.98104 0.97131 1.22893 0.89047 0.97339 0.95945 0.89940 1.58847 1.03852 1.20671 1.52468 0.93088 0.96873 0.94642 0.89649 0.91942 0.90282 0.93170 0.86135 0.83406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.29 55.43 0.74 -25.83 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 15 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 5 H -0.27 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 15 7 C -0.52 -14.58 8.67 -34.44 -0.30 -14.88 15 8 H 0.05 1.44 7.69 -52.49 -0.40 1.03 15 9 C 0.04 1.11 3.30 -27.89 -0.09 1.02 15 10 C -0.11 -2.30 3.10 -89.05 -0.28 -2.57 15 11 H 0.07 1.52 8.14 -51.93 -0.42 1.10 15 12 C 0.05 1.08 6.69 37.93 0.25 1.33 15 13 O -0.39 -7.35 11.65 -35.23 -0.41 -7.76 15 14 C 0.01 0.20 7.34 37.93 0.28 0.48 15 15 C 0.06 1.05 4.25 -66.15 -0.28 0.76 15 16 H 0.08 1.35 8.14 -51.93 -0.42 0.92 15 17 N -0.83 -13.97 8.15 -3.34 -0.03 -13.99 15 18 H 0.26 7.33 8.31 -40.82 -0.34 6.99 15 19 H 0.01 0.34 6.86 -51.92 -0.36 -0.01 15 20 H 0.04 0.98 7.81 -51.93 -0.41 0.58 15 21 H 0.09 1.63 8.14 -51.93 -0.42 1.21 15 22 H 0.06 1.29 7.81 -51.93 -0.41 0.89 15 23 H 0.08 1.07 8.14 -51.93 -0.42 0.64 15 24 H 0.05 0.77 7.99 -51.93 -0.42 0.36 15 25 H 0.33 4.39 9.08 -39.29 -0.36 4.04 15 26 H 0.35 6.24 7.21 -39.29 -0.28 5.95 15 LS Contribution 218.09 15.07 3.29 3.29 Total: -1.00 -29.95 218.09 -5.40 -35.36 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -3.45 Total: 4.65 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -0.51 Total: -12.30 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.71 Total: -39.83 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -0.41 Total: -7.76 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -29.95 -5.40 -35.36 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260866316.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.736 kcal (2) G-P(sol) polarization free energy of solvation -29.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds