Wall clock time and date at job start Mon Mar 30 2020 02:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 H 1.08996 * 110.45724 * 303.84935 * 10 9 7 12 12 C 1.54479 * 110.51093 * 66.45470 * 10 9 7 13 13 O 1.44426 * 104.80366 * 142.62728 * 12 10 9 14 14 C 1.44421 * 105.27152 * 319.48557 * 13 12 10 15 15 C 1.54477 * 104.80477 * 40.51426 * 14 13 12 16 16 H 1.08999 * 110.50799 * 94.66510 * 15 14 13 17 17 N 1.46900 * 110.50955 * 217.37351 * 15 14 13 18 18 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 19 19 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 20 20 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 21 21 H 1.08999 * 110.37268 * 261.45705 * 12 10 9 22 22 H 1.08999 * 110.37458 * 23.78875 * 12 10 9 23 23 H 1.09000 * 110.37356 * 159.34873 * 14 13 12 24 24 H 1.09006 * 110.37317 * 281.67989 * 14 13 12 25 25 H 1.00895 * 111.00492 * 294.64123 * 17 15 14 26 26 H 1.00903 * 111.00241 * 58.59647 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9252 -3.5821 -0.8487 12 6 3.0363 -3.6980 1.3259 13 8 3.1920 -5.1024 1.6249 14 6 1.9250 -5.7064 1.2847 15 6 1.4973 -5.0138 -0.0282 16 1 1.8076 -5.6044 -0.8902 17 7 0.0444 -4.7979 -0.0466 18 1 -0.4850 0.8401 0.0004 19 1 0.6247 -2.5571 0.8897 20 1 0.6240 -2.5568 -0.8903 21 1 4.0110 -3.2267 1.1993 22 1 2.4739 -3.2016 2.1167 23 1 2.0458 -6.7781 1.1265 24 1 1.1920 -5.5182 2.0693 25 1 -0.4516 -5.6763 -0.0648 26 1 -0.2474 -4.2341 0.7377 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260866316.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:23 Heat of formation + Delta-G solvation = -76.461939 kcal Electronic energy + Delta-G solvation = -10208.222967 eV Core-core repulsion = 8285.488597 eV Total energy + Delta-G solvation = -1922.734369 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.60582 -35.95467 -34.77205 -32.43650 -28.55552 -28.18224 -25.07930 -23.33097 -20.38685 -18.84918 -17.42976 -16.85045 -16.33926 -16.19051 -15.83991 -14.71663 -14.31397 -14.02359 -13.44045 -13.08422 -12.98757 -12.64992 -12.32908 -12.15376 -11.53117 -11.07195 -11.01033 -10.79717 -10.47619 -9.48761 -8.14259 -6.23924 1.41619 1.42220 1.52904 2.43632 3.04055 3.18771 3.78970 3.83483 3.93764 4.16049 4.30512 4.42858 4.74683 4.90039 4.95521 5.07883 5.13158 5.57506 5.77036 5.85861 5.94272 6.27566 6.31642 6.69719 6.95690 7.44208 8.96509 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.070176 B = 0.013433 C = 0.011832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.899723 B = 2083.954188 C = 2365.803402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.003 3.997 3 Si 0.957 3.043 4 H -0.274 1.274 5 H -0.266 1.266 6 H -0.284 1.284 7 C -0.542 4.542 8 H 0.056 0.944 9 C 0.059 3.941 10 C -0.113 4.113 11 H 0.066 0.934 12 C 0.063 3.937 13 O -0.396 6.396 14 C 0.014 3.986 15 C 0.066 3.934 16 H 0.098 0.902 17 N -0.839 5.839 18 H 0.261 0.739 19 H -0.004 1.004 20 H 0.003 0.997 21 H 0.089 0.911 22 H 0.049 0.951 23 H 0.113 0.887 24 H 0.056 0.944 25 H 0.348 0.652 26 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.731 -8.494 1.891 9.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.782 3.218 4 H -0.199 1.199 5 H -0.190 1.190 6 H -0.210 1.210 7 C -0.580 4.580 8 H 0.075 0.925 9 C 0.022 3.978 10 C -0.132 4.132 11 H 0.085 0.915 12 C -0.014 4.014 13 O -0.315 6.315 14 C -0.064 4.064 15 C -0.046 4.046 16 H 0.116 0.884 17 N -0.371 5.371 18 H 0.070 0.930 19 H 0.015 0.985 20 H 0.021 0.979 21 H 0.108 0.892 22 H 0.067 0.933 23 H 0.131 0.869 24 H 0.074 0.926 25 H 0.163 0.837 26 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.901 -8.125 1.277 8.722 hybrid contribution -0.021 0.683 0.803 1.055 sum 2.880 -7.442 2.081 8.247 Atomic orbital electron populations 1.70098 1.07534 1.27425 1.51741 1.25878 0.95690 1.02909 0.95065 0.85572 0.78723 0.79142 0.78349 1.19914 1.19031 1.20998 1.21754 0.93385 0.92640 1.50206 0.92536 1.18660 0.93059 0.90571 0.95558 1.22561 0.97724 0.95550 0.97402 0.91535 1.23359 1.00671 0.81621 0.95745 1.89010 1.34133 1.21237 1.87094 1.24473 0.86105 0.99593 0.96262 1.22834 0.88880 0.95388 0.97541 0.88381 1.58772 1.03994 1.22083 1.52270 0.92996 0.98536 0.97860 0.89225 0.93318 0.86881 0.92562 0.83750 0.84216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.96 13.29 21.45 0.28 -55.67 15 2 C 0.00 0.14 5.46 84.66 0.46 0.61 15 3 Si 0.96 44.25 29.54 68.60 2.03 46.28 15 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 15 5 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 6 H -0.28 -12.95 7.11 99.48 0.71 -12.24 15 7 C -0.54 -30.32 8.67 25.60 0.22 -30.09 15 8 H 0.06 3.05 7.69 -2.91 -0.02 3.02 15 9 C 0.06 3.02 3.30 29.85 0.10 3.12 15 10 C -0.11 -4.66 3.10 -9.78 -0.03 -4.69 15 11 H 0.07 2.78 8.14 -2.39 -0.02 2.76 15 12 C 0.06 2.42 6.69 72.48 0.48 2.90 15 13 O -0.40 -14.06 11.65 -148.98 -1.74 -15.79 15 14 C 0.01 0.42 7.34 72.48 0.53 0.95 15 15 C 0.07 2.17 4.25 45.93 0.20 2.37 15 16 H 0.10 2.94 8.14 -2.39 -0.02 2.92 15 17 N -0.84 -27.44 8.15 -164.48 -1.34 -28.78 15 18 H 0.26 14.89 8.31 -92.71 -0.77 14.12 15 19 H 0.00 -0.20 6.86 -2.38 -0.02 -0.21 15 20 H 0.00 0.17 7.81 -2.39 -0.02 0.15 15 21 H 0.09 3.35 8.14 -2.39 -0.02 3.33 15 22 H 0.05 2.01 7.81 -2.39 -0.02 1.99 15 23 H 0.11 2.57 8.14 -2.39 -0.02 2.55 15 24 H 0.06 1.59 7.99 -2.38 -0.02 1.57 15 25 H 0.35 8.69 9.08 -89.70 -0.81 7.88 15 26 H 0.34 12.16 7.21 -89.69 -0.65 11.52 15 Total: -1.00 -63.02 218.09 0.92 -62.10 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -0.28 Total: 16.70 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 1.96 Total: -24.83 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -1.06 Total: -84.46 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -1.74 Total: -15.79 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -63.02 0.92 -62.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260866316.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.361 kcal (2) G-P(sol) polarization free energy of solvation -63.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds