Wall clock time and date at job start Mon Mar 30 2020 02:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99609 * 2 1 4 4 H 1.48503 * 109.47199 * 240.00286 * 3 2 1 5 5 H 1.48502 * 109.47199 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47073 * 120.00304 * 3 2 1 7 7 C 1.37876 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99743 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99918 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46742 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.91539 * 57.13238 * 10 9 7 12 12 C 1.54387 * 110.84915 * 293.54507 * 10 9 7 13 13 O 1.43236 * 107.59079 * 220.45676 * 12 10 9 14 14 C 1.43643 * 109.97149 * 358.28683 * 13 12 10 15 15 C 1.54947 * 105.13652 * 24.42759 * 14 13 12 16 16 H 1.09008 * 111.12113 * 81.47257 * 15 14 13 17 17 N 1.46900 * 111.12613 * 205.63345 * 15 14 13 18 18 H 0.96991 * 120.00644 * 359.97438 * 1 2 3 19 19 H 1.08993 * 109.47129 * 60.00689 * 9 7 2 20 20 H 1.08996 * 109.47434 * 300.00085 * 9 7 2 21 21 H 1.09001 * 109.82619 * 339.97172 * 12 10 9 22 22 H 1.09002 * 109.82943 * 100.93725 * 12 10 9 23 23 H 1.08997 * 110.30752 * 143.34329 * 14 13 12 24 24 H 1.09001 * 110.31193 * 265.41926 * 14 13 12 25 25 H 1.00897 * 110.99943 * 291.55853 * 17 15 14 26 26 H 1.00894 * 111.00050 * 55.51883 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 1 2.9183 -3.5986 0.8546 12 6 3.0406 -3.7050 -1.3232 13 8 3.1650 -5.0789 -1.7090 14 6 2.5501 -5.9230 -0.7227 15 6 1.5017 -5.0252 -0.0187 16 1 0.5826 -4.9635 -0.6015 17 7 1.2300 -5.4983 1.3453 18 1 -0.4850 0.8399 0.0004 19 1 0.6242 -2.5567 -0.8903 20 1 0.6248 -2.5571 0.8896 21 1 2.5053 -3.1513 -2.0945 22 1 4.0296 -3.2717 -1.1743 23 1 2.0611 -6.7709 -1.2024 24 1 3.2939 -6.2716 -0.0063 25 1 0.7467 -6.3839 1.3312 26 1 2.0814 -5.5594 1.8831 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260866319.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:24 Heat of formation + Delta-G solvation = -83.964892 kcal Electronic energy + Delta-G solvation = -10097.953686 eV Core-core repulsion = 8174.893965 eV Total energy + Delta-G solvation = -1923.059722 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.55454 -35.85337 -34.96505 -32.76707 -28.54685 -28.33816 -25.08051 -22.70445 -21.33714 -18.40708 -17.75732 -17.01136 -16.45250 -16.10504 -15.69383 -14.69408 -14.27822 -14.05895 -13.51657 -13.38069 -13.15847 -12.72565 -12.41173 -11.92365 -11.72260 -11.31272 -11.10387 -10.54076 -10.50553 -9.56471 -8.17550 -6.28751 1.41192 1.43929 1.51639 2.42107 2.90036 3.15625 3.63105 3.75038 3.96774 4.10133 4.29166 4.37738 4.69385 4.86698 4.96887 4.99460 5.26009 5.49988 5.70196 5.82178 6.01012 6.21675 6.25107 6.65769 6.87372 7.40260 8.93861 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.069870 B = 0.012521 C = 0.011353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.647289 B = 2235.749542 C = 2465.799210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.962 3.038 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.539 4.539 8 H 0.061 0.939 9 C 0.048 3.952 10 C -0.100 4.100 11 H 0.073 0.927 12 C 0.067 3.933 13 O -0.405 6.405 14 C 0.021 3.979 15 C 0.066 3.934 16 H 0.081 0.919 17 N -0.834 5.834 18 H 0.263 0.737 19 H -0.011 1.011 20 H -0.004 1.004 21 H 0.057 0.943 22 H 0.068 0.932 23 H 0.100 0.900 24 H 0.071 0.929 25 H 0.355 0.645 26 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.929 -9.382 0.446 10.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.577 4.577 8 H 0.079 0.921 9 C 0.011 3.989 10 C -0.119 4.119 11 H 0.092 0.908 12 C -0.009 4.009 13 O -0.324 6.324 14 C -0.057 4.057 15 C -0.046 4.046 16 H 0.100 0.900 17 N -0.367 5.367 18 H 0.072 0.928 19 H 0.008 0.992 20 H 0.014 0.986 21 H 0.075 0.925 22 H 0.086 0.914 23 H 0.118 0.882 24 H 0.089 0.911 25 H 0.170 0.830 26 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.441 -8.685 0.339 9.760 hybrid contribution 0.548 0.339 -0.092 0.651 sum 4.989 -8.346 0.247 9.726 Atomic orbital electron populations 1.70094 1.07813 1.27763 1.51653 1.25961 0.95706 1.03288 0.94829 0.85542 0.78291 0.78300 0.79173 1.19147 1.20995 1.19209 1.21620 0.93462 0.92139 1.50448 0.92056 1.18804 0.93418 0.91849 0.94865 1.22598 0.97333 0.95115 0.96851 0.90824 1.23036 0.99689 0.81963 0.96224 1.88301 1.79703 1.17138 1.47275 1.24368 0.95168 0.94262 0.91932 1.23119 0.97613 0.93598 0.90320 0.90049 1.58513 1.29969 1.36275 1.11898 0.92835 0.99245 0.98574 0.92453 0.91361 0.88224 0.91058 0.83037 0.83652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.33 13.29 21.45 0.28 -57.05 15 2 C 0.00 0.00 5.46 84.65 0.46 0.46 15 3 Si 0.96 44.40 29.54 68.60 2.03 46.43 15 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 15 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 15 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 7 C -0.54 -30.46 8.68 25.60 0.22 -30.24 15 8 H 0.06 3.30 7.69 -2.91 -0.02 3.27 15 9 C 0.05 2.53 4.37 29.85 0.13 2.66 15 10 C -0.10 -4.10 2.66 -9.53 -0.03 -4.13 15 11 H 0.07 2.97 8.09 -2.39 -0.02 2.95 15 12 C 0.07 2.65 6.92 72.45 0.50 3.16 15 13 O -0.41 -14.53 11.36 -148.98 -1.69 -16.22 15 14 C 0.02 0.60 7.46 72.65 0.54 1.14 15 15 C 0.07 2.19 3.72 46.37 0.17 2.36 15 16 H 0.08 2.93 8.04 -2.38 -0.02 2.91 15 17 N -0.83 -23.32 9.42 -162.65 -1.53 -24.85 15 18 H 0.26 15.23 8.31 -92.72 -0.77 14.45 15 19 H -0.01 -0.62 8.07 -2.39 -0.02 -0.64 15 20 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 15 21 H 0.06 2.47 7.76 -2.39 -0.02 2.45 15 22 H 0.07 2.57 8.14 -2.39 -0.02 2.55 15 23 H 0.10 2.32 8.14 -2.39 -0.02 2.30 15 24 H 0.07 1.73 8.07 -2.39 -0.02 1.71 15 25 H 0.35 7.58 9.08 -89.70 -0.81 6.76 15 26 H 0.35 8.55 8.89 -89.70 -0.80 7.75 15 Total: -1.00 -65.10 222.62 0.66 -64.45 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -0.44 Total: 11.83 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 2.01 Total: -24.59 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -1.25 Total: -81.90 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -1.69 Total: -16.22 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -65.10 0.66 -64.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260866319.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.517 kcal (2) G-P(sol) polarization free energy of solvation -65.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds