Wall clock time and date at job start Mon Mar 30 2020 02:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.45561 * 52.39297 * 10 9 7 12 12 C 1.54484 * 110.51006 * 289.64345 * 10 9 7 13 13 O 1.44421 * 104.80216 * 217.37919 * 12 10 9 14 14 C 1.44434 * 105.27855 * 40.50889 * 13 12 10 15 15 C 1.54480 * 104.80092 * 319.49189 * 14 13 12 16 16 H 1.08999 * 110.62800 * 265.27183 * 15 14 13 17 17 N 1.46895 * 110.51151 * 142.61875 * 15 14 13 18 18 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 19 19 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 20 20 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 21 21 H 1.09005 * 110.37135 * 336.20745 * 12 10 9 22 22 H 1.08995 * 110.36963 * 98.54683 * 12 10 9 23 23 H 1.08994 * 110.37636 * 200.66055 * 14 13 12 24 24 H 1.09001 * 110.46313 * 78.36295 * 14 13 12 25 25 H 1.00900 * 110.99566 * 65.36213 * 17 15 14 26 26 H 1.00900 * 111.00287 * 189.30391 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9666 -3.5466 0.8085 12 6 2.9668 -3.7574 -1.3632 13 8 3.1084 -5.1737 -1.6075 14 6 1.8614 -5.7609 -1.1758 15 6 1.5015 -5.0104 0.1256 16 1 1.8549 -5.5616 0.9970 17 7 0.0513 -4.7922 0.2096 18 1 -0.4849 -0.8401 0.0004 19 1 0.6248 -2.5571 0.8897 20 1 0.6241 -2.5567 -0.8903 21 1 2.3635 -3.2959 -2.1451 22 1 3.9461 -3.2821 -1.3081 23 1 1.9916 -6.8246 -0.9768 24 1 1.0877 -5.6082 -1.9282 25 1 -0.4420 -5.6685 0.2923 26 1 -0.1779 -4.1749 0.9741 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260866321.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:26 Heat of formation + Delta-G solvation = -57.160164 kcal Electronic energy + Delta-G solvation = -10223.854558 eV Core-core repulsion = 8301.957177 eV Total energy + Delta-G solvation = -1921.897381 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.08005 -34.52566 -33.08861 -30.50265 -27.32585 -25.98087 -23.13676 -21.72436 -19.00636 -17.05938 -15.83530 -15.12539 -15.11408 -14.63942 -13.83013 -13.69513 -12.62849 -12.36430 -11.62931 -11.41233 -11.07800 -10.74996 -10.34158 -10.10119 -10.08742 -9.58744 -9.26851 -8.47183 -8.35472 -8.21174 -6.32222 -4.01449 3.44861 3.48652 3.64279 4.44982 4.56746 4.89828 5.14388 5.39426 5.45305 5.53972 5.83734 5.96112 6.13056 6.21037 6.49305 6.65266 6.73908 7.23580 7.38458 7.54166 7.67693 7.80683 8.26808 8.50967 8.93233 9.70689 11.08597 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.070131 B = 0.013428 C = 0.011832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.155675 B = 2084.701893 C = 2365.819063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.015 3.985 3 Si 1.069 2.931 4 H -0.289 1.289 5 H -0.285 1.285 6 H -0.289 1.289 7 C -0.606 4.606 8 H 0.047 0.953 9 C 0.033 3.967 10 C -0.104 4.104 11 H 0.067 0.933 12 C 0.063 3.937 13 O -0.390 6.390 14 C 0.054 3.946 15 C 0.054 3.946 16 H 0.037 0.963 17 N -0.833 5.833 18 H 0.271 0.729 19 H 0.007 0.993 20 H 0.022 0.978 21 H 0.064 0.936 22 H 0.085 0.915 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.328 0.672 26 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.424 -8.194 0.246 8.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.189 4.189 3 Si 0.898 3.102 4 H -0.216 1.216 5 H -0.210 1.210 6 H -0.215 1.215 7 C -0.644 4.644 8 H 0.065 0.935 9 C -0.004 4.004 10 C -0.123 4.123 11 H 0.086 0.914 12 C -0.013 4.013 13 O -0.309 6.309 14 C -0.023 4.023 15 C -0.058 4.058 16 H 0.055 0.945 17 N -0.366 5.366 18 H 0.081 0.919 19 H 0.025 0.975 20 H 0.040 0.960 21 H 0.082 0.918 22 H 0.103 0.897 23 H 0.096 0.904 24 H 0.084 0.916 25 H 0.139 0.861 26 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.505 -6.328 -0.574 6.830 hybrid contribution 0.115 -2.018 1.142 2.322 sum 2.620 -8.345 0.568 8.766 Atomic orbital electron populations 1.70736 1.06855 1.30786 1.46581 1.25793 0.96579 1.02593 0.93900 0.83545 0.74717 0.75309 0.76650 1.21591 1.21035 1.21534 1.22153 0.94208 0.92270 1.55785 0.93502 1.19046 0.93530 0.91177 0.96694 1.22564 0.98181 0.94499 0.97087 0.91422 1.23436 1.00826 0.80364 0.96674 1.89015 1.35138 1.21396 1.85355 1.23350 0.87188 0.96632 0.95179 1.22787 0.89110 0.97312 0.96560 0.94514 1.58824 1.06060 1.17817 1.53855 0.91873 0.97522 0.95980 0.91776 0.89722 0.90435 0.91625 0.86065 0.83288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.97 13.65 55.43 0.76 -27.22 15 2 C 0.02 0.44 5.46 -17.82 -0.10 0.34 15 3 Si 1.07 25.48 29.90 -169.99 -5.08 20.40 15 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 6 H -0.29 -6.57 7.11 56.52 0.40 -6.17 15 7 C -0.61 -17.12 8.77 -34.44 -0.30 -17.42 15 8 H 0.05 1.31 7.74 -52.48 -0.41 0.90 15 9 C 0.03 0.83 2.69 -27.88 -0.07 0.75 15 10 C -0.10 -2.21 3.06 -89.05 -0.27 -2.48 15 11 H 0.07 1.45 8.14 -51.93 -0.42 1.03 15 12 C 0.06 1.30 6.85 37.94 0.26 1.56 15 13 O -0.39 -7.56 11.65 -35.23 -0.41 -7.97 15 14 C 0.05 0.91 7.36 37.93 0.28 1.18 15 15 C 0.05 0.95 4.25 -66.15 -0.28 0.67 15 16 H 0.04 0.60 8.14 -51.93 -0.42 0.18 15 17 N -0.83 -13.90 8.26 -3.34 -0.03 -13.93 15 18 H 0.27 8.26 7.22 -40.82 -0.29 7.97 15 19 H 0.01 0.17 6.45 -51.93 -0.33 -0.16 15 20 H 0.02 0.60 7.73 -51.93 -0.40 0.20 15 21 H 0.06 1.40 7.75 -51.93 -0.40 1.00 15 22 H 0.08 1.67 8.14 -51.93 -0.42 1.25 15 23 H 0.08 1.08 8.14 -51.93 -0.42 0.65 15 24 H 0.07 1.11 8.06 -51.93 -0.42 0.69 15 25 H 0.33 4.37 9.08 -39.29 -0.36 4.01 15 26 H 0.35 6.10 7.15 -39.29 -0.28 5.82 15 LS Contribution 216.95 15.07 3.27 3.27 Total: -1.00 -30.70 216.95 -5.37 -36.06 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -3.38 Total: 4.76 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -0.49 Total: -15.39 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.73 Total: -41.14 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.41 Total: -7.97 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.40 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -30.70 -5.37 -36.06 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260866321.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.097 kcal (2) G-P(sol) polarization free energy of solvation -30.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds