Wall clock time and date at job start Mon Mar 30 2020 02:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.45561 * 52.39297 * 10 9 7 12 12 C 1.54484 * 110.51006 * 289.64345 * 10 9 7 13 13 O 1.44421 * 104.80216 * 217.37919 * 12 10 9 14 14 C 1.44434 * 105.27855 * 40.50889 * 13 12 10 15 15 C 1.54480 * 104.80092 * 319.49189 * 14 13 12 16 16 H 1.08999 * 110.62800 * 265.27183 * 15 14 13 17 17 N 1.46895 * 110.51151 * 142.61875 * 15 14 13 18 18 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 19 19 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 20 20 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 21 21 H 1.09005 * 110.37135 * 336.20745 * 12 10 9 22 22 H 1.08995 * 110.36963 * 98.54683 * 12 10 9 23 23 H 1.08994 * 110.37636 * 200.66055 * 14 13 12 24 24 H 1.09001 * 110.46313 * 78.36295 * 14 13 12 25 25 H 1.00900 * 110.99566 * 65.36213 * 17 15 14 26 26 H 1.00900 * 111.00287 * 189.30391 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9666 -3.5466 0.8085 12 6 2.9668 -3.7574 -1.3632 13 8 3.1084 -5.1737 -1.6075 14 6 1.8614 -5.7609 -1.1758 15 6 1.5015 -5.0104 0.1256 16 1 1.8549 -5.5616 0.9970 17 7 0.0513 -4.7922 0.2096 18 1 -0.4849 -0.8401 0.0004 19 1 0.6248 -2.5571 0.8897 20 1 0.6241 -2.5567 -0.8903 21 1 2.3635 -3.2959 -2.1451 22 1 3.9461 -3.2821 -1.3081 23 1 1.9916 -6.8246 -0.9768 24 1 1.0877 -5.6082 -1.9282 25 1 -0.4420 -5.6685 0.2923 26 1 -0.1779 -4.1749 0.9741 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260866321.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:26 Heat of formation + Delta-G solvation = -80.208207 kcal Electronic energy + Delta-G solvation = -10224.853996 eV Core-core repulsion = 8301.957177 eV Total energy + Delta-G solvation = -1922.896820 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.62084 -36.26161 -34.94566 -32.30697 -28.73662 -27.92004 -25.14601 -23.33678 -20.64239 -19.06102 -17.46066 -16.68240 -16.56609 -16.20841 -15.62233 -15.31489 -14.65361 -14.06964 -13.54687 -12.93770 -12.89038 -12.54120 -11.97013 -11.89241 -11.83641 -11.45753 -10.83283 -10.57632 -10.49093 -9.61626 -8.62673 -6.32760 1.53301 1.62152 1.79535 2.58559 2.99067 3.21063 3.51198 3.68264 3.93509 4.04886 4.29316 4.44263 4.74416 4.82024 4.86298 4.91474 4.94486 5.33791 5.56011 5.71742 6.05220 6.18281 6.27730 6.57020 6.68988 7.48134 8.78325 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.070131 B = 0.013428 C = 0.011832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.155675 B = 2084.701893 C = 2365.819063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.038 4.038 3 Si 1.116 2.884 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.619 4.619 8 H 0.047 0.953 9 C 0.045 3.955 10 C -0.108 4.108 11 H 0.065 0.935 12 C 0.068 3.932 13 O -0.394 6.394 14 C 0.053 3.947 15 C 0.060 3.940 16 H 0.059 0.941 17 N -0.843 5.843 18 H 0.258 0.742 19 H -0.004 1.004 20 H -0.005 1.005 21 H 0.044 0.956 22 H 0.089 0.911 23 H 0.116 0.884 24 H 0.061 0.939 25 H 0.349 0.651 26 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.314 -8.875 0.491 9.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.236 4.236 3 Si 0.938 3.062 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.657 4.657 8 H 0.066 0.934 9 C 0.007 3.993 10 C -0.127 4.127 11 H 0.084 0.916 12 C -0.008 4.008 13 O -0.313 6.313 14 C -0.024 4.024 15 C -0.052 4.052 16 H 0.077 0.923 17 N -0.377 5.377 18 H 0.068 0.932 19 H 0.014 0.986 20 H 0.014 0.986 21 H 0.062 0.938 22 H 0.108 0.892 23 H 0.134 0.866 24 H 0.079 0.921 25 H 0.163 0.837 26 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.394 -7.054 -0.328 7.835 hybrid contribution -0.191 -1.876 1.061 2.164 sum 3.203 -8.930 0.733 9.516 Atomic orbital electron populations 1.70869 1.07874 1.30072 1.48788 1.27298 0.96663 1.06603 0.93032 0.82942 0.74196 0.71388 0.77671 1.19897 1.21041 1.19583 1.22584 0.94536 0.93730 1.54845 0.93447 1.18827 0.93660 0.91990 0.94773 1.22490 0.97669 0.95086 0.97465 0.91634 1.23251 1.00587 0.81375 0.95593 1.89011 1.36421 1.20334 1.85521 1.23550 0.86091 0.98387 0.94360 1.22744 0.89192 0.95237 0.98012 0.92320 1.58744 1.05961 1.19195 1.53824 0.93249 0.98556 0.98633 0.93760 0.89227 0.86613 0.92051 0.83663 0.83881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.23 13.65 21.45 0.29 -57.93 15 2 C -0.04 -2.22 5.46 84.65 0.46 -1.76 15 3 Si 1.12 50.66 29.90 68.60 2.05 52.71 15 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 15 5 H -0.28 -12.86 7.11 99.48 0.71 -12.16 15 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 15 7 C -0.62 -35.08 8.77 25.60 0.22 -34.85 15 8 H 0.05 2.62 7.74 -2.91 -0.02 2.60 15 9 C 0.04 2.29 2.69 29.85 0.08 2.37 15 10 C -0.11 -4.49 3.06 -9.77 -0.03 -4.52 15 11 H 0.07 2.74 8.14 -2.39 -0.02 2.72 15 12 C 0.07 2.76 6.85 72.49 0.50 3.26 15 13 O -0.39 -14.44 11.65 -148.98 -1.74 -16.18 15 14 C 0.05 1.63 7.36 72.49 0.53 2.17 15 15 C 0.06 1.99 4.25 45.93 0.20 2.18 15 16 H 0.06 1.72 8.14 -2.39 -0.02 1.70 15 17 N -0.84 -27.04 8.26 -164.48 -1.36 -28.40 15 18 H 0.26 16.17 7.22 -92.71 -0.67 15.50 15 19 H 0.00 -0.19 6.45 -2.39 -0.02 -0.21 15 20 H 0.00 -0.26 7.73 -2.39 -0.02 -0.28 15 21 H 0.04 1.94 7.75 -2.38 -0.02 1.93 15 22 H 0.09 3.47 8.14 -2.39 -0.02 3.45 15 23 H 0.12 2.71 8.14 -2.39 -0.02 2.69 15 24 H 0.06 1.95 8.06 -2.39 -0.02 1.93 15 25 H 0.35 8.55 9.08 -89.69 -0.81 7.73 15 26 H 0.35 11.86 7.15 -89.69 -0.64 11.21 15 Total: -1.00 -64.79 216.95 1.04 -63.76 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -0.18 Total: 17.20 kcal Atomic # 6 Polarization: -33.12 SS G_CDS: 1.96 Total: -31.16 kcal Atomic # 7 Polarization: -85.27 SS G_CDS: -1.07 Total: -86.33 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -1.74 Total: -16.18 kcal Atomic # 14 Polarization: 50.66 SS G_CDS: 2.05 Total: 52.71 kcal Total: -64.79 1.04 -63.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260866321.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.451 kcal (2) G-P(sol) polarization free energy of solvation -64.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds