Wall clock time and date at job start Mon Mar 30 2020 02:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99845 * 2 1 4 4 H 1.48504 * 109.47077 * 269.99301 * 3 2 1 5 5 H 1.48498 * 109.47457 * 29.99575 * 3 2 1 6 6 H 1.48504 * 109.47179 * 149.99525 * 3 2 1 7 7 C 1.37870 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00261 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99950 * 0.02562 * 7 2 1 10 10 H 1.08992 * 109.47337 * 59.99803 * 9 7 2 11 11 C 1.53006 * 109.47131 * 299.99759 * 9 7 2 12 12 O 1.42895 * 109.47036 * 305.00351 * 11 9 7 13 13 N 1.46904 * 109.47209 * 180.02562 * 9 7 2 14 14 C 1.47479 * 110.99832 * 199.02975 * 13 9 7 15 15 C 1.53510 * 87.93279 * 138.70204 * 14 13 9 16 16 C 1.47477 * 110.99645 * 294.99775 * 13 9 7 17 17 H 0.97000 * 119.99824 * 0.02562 * 1 2 3 18 18 H 1.09001 * 109.47002 * 64.99829 * 11 9 7 19 19 H 1.08993 * 109.46955 * 185.00266 * 11 9 7 20 20 H 0.96700 * 113.99916 * 179.97438 * 12 11 9 21 21 H 1.09000 * 113.47607 * 253.46731 * 14 13 9 22 22 H 1.08998 * 113.47942 * 23.93209 * 14 13 9 23 23 H 1.08997 * 114.16771 * 220.33153 * 15 14 13 24 24 H 1.08997 * 114.17653 * 87.62177 * 15 14 13 25 25 H 1.09007 * 113.47897 * 336.06331 * 16 13 9 26 26 H 1.09001 * 113.48115 * 106.47263 * 16 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6247 -2.5571 -0.8896 11 6 0.3710 -2.5799 1.2495 12 8 1.1771 -2.3874 2.4135 13 7 2.2057 -3.6157 0.0018 14 6 1.5601 -4.8634 -0.4471 15 6 2.8319 -5.1665 -1.2516 16 6 2.9923 -3.6398 -1.2455 17 1 -0.4850 0.8401 -0.0004 18 1 -0.3944 -1.8051 1.2054 19 1 -0.1055 -3.5591 1.2955 20 1 0.6838 -2.4255 3.2443 21 1 1.3777 -5.5727 0.3602 22 1 0.6813 -4.6978 -1.0702 23 1 2.6454 -5.5917 -2.2377 24 1 3.5996 -5.6982 -0.6895 25 1 2.4956 -3.1476 -2.0817 26 1 4.0233 -3.3111 -1.1151 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260878938.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:50 Heat of formation + Delta-G solvation = -10.099074 kcal Electronic energy + Delta-G solvation = -10368.596358 eV Core-core repulsion = 8448.739698 eV Total energy + Delta-G solvation = -1919.856659 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.04605 -35.43376 -32.80871 -29.91506 -25.60726 -25.53102 -24.07988 -20.24755 -18.97536 -16.55123 -15.89331 -15.18985 -14.86655 -14.04785 -13.41106 -12.63566 -12.05780 -12.03023 -11.69823 -11.33777 -10.93336 -10.70998 -10.53484 -10.14924 -9.96176 -9.45409 -8.83732 -8.66664 -8.34442 -7.66780 -5.98958 -3.99899 3.33841 3.39773 3.46656 4.46307 5.04529 5.16744 5.35095 5.60393 5.76228 6.03311 6.19847 6.26963 6.34434 6.47716 6.60335 6.70970 6.83120 7.11036 7.25854 7.60863 7.94444 8.25866 8.44440 8.99802 9.04170 9.63288 11.08905 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.053171 B = 0.017329 C = 0.014799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.475474 B = 1615.443225 C = 1891.526623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.482 4.482 8 H 0.060 0.940 9 C 0.181 3.819 10 H 0.018 0.982 11 C 0.093 3.907 12 O -0.548 6.548 13 N -0.458 5.458 14 C -0.009 4.009 15 C -0.153 4.153 16 C 0.016 3.984 17 H 0.260 0.740 18 H 0.073 0.927 19 H -0.007 1.007 20 H 0.343 0.657 21 H 0.068 0.932 22 H 0.056 0.944 23 H 0.062 0.938 24 H 0.082 0.918 25 H 0.063 0.937 26 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.110 -5.878 -0.938 6.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.142 4.142 3 Si 0.729 3.271 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.520 4.520 8 H 0.079 0.921 9 C 0.074 3.926 10 H 0.036 0.964 11 C 0.015 3.985 12 O -0.349 6.349 13 N -0.181 5.181 14 C -0.138 4.138 15 C -0.191 4.191 16 C -0.114 4.114 17 H 0.069 0.931 18 H 0.091 0.909 19 H 0.011 0.989 20 H 0.185 0.815 21 H 0.087 0.913 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.101 0.899 25 H 0.081 0.919 26 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.751 -5.607 -0.737 5.920 hybrid contribution -0.682 0.957 -0.317 1.217 sum 1.069 -4.650 -1.054 4.886 Atomic orbital electron populations 1.69849 1.05934 1.26524 1.52068 1.24891 0.94910 0.99231 0.95198 0.86449 0.79910 0.82966 0.77790 1.20917 1.21313 1.19842 1.20890 0.93211 0.89185 1.48721 0.92139 1.19902 0.90509 0.90085 0.92138 0.96437 1.22244 0.94111 0.95703 0.86467 1.86704 1.37620 1.95839 1.14718 1.69009 1.16674 1.02240 1.30189 1.23701 0.95929 0.96312 0.97889 1.23157 0.98736 0.97690 0.99524 1.23426 1.00218 0.93747 0.93997 0.93056 0.90863 0.98910 0.81495 0.91347 0.92570 0.91977 0.89920 0.91880 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.19 11.37 55.43 0.63 -25.56 15 2 C 0.06 1.65 5.30 -17.82 -0.09 1.55 15 3 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 15 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 6 H -0.27 -6.78 7.11 56.52 0.40 -6.38 15 7 C -0.48 -13.87 7.69 -34.44 -0.26 -14.13 15 8 H 0.06 1.78 7.63 -52.49 -0.40 1.38 15 9 C 0.18 4.78 1.46 -68.86 -0.10 4.68 15 10 H 0.02 0.50 7.56 -51.93 -0.39 0.11 15 11 C 0.09 2.35 6.47 37.16 0.24 2.59 15 12 O -0.55 -13.67 13.09 -35.23 -0.46 -14.13 15 13 N -0.46 -10.70 6.07 -238.04 -1.45 -12.15 15 14 C -0.01 -0.17 7.18 -7.55 -0.05 -0.22 15 15 C -0.15 -2.54 8.47 -26.20 -0.22 -2.76 15 16 C 0.02 0.32 6.90 -7.55 -0.05 0.26 15 17 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 18 H 0.07 1.99 6.22 -51.93 -0.32 1.66 15 19 H -0.01 -0.17 7.75 -51.93 -0.40 -0.57 15 20 H 0.34 6.64 9.12 45.56 0.42 7.06 15 21 H 0.07 1.23 8.14 -51.93 -0.42 0.81 15 22 H 0.06 1.06 7.62 -51.93 -0.40 0.67 15 23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 24 H 0.08 1.28 8.14 -51.93 -0.42 0.86 15 25 H 0.06 1.32 7.85 -51.93 -0.41 0.91 15 26 H 0.07 1.41 8.14 -51.93 -0.42 0.99 15 LS Contribution 219.48 15.07 3.31 3.31 Total: -1.00 -31.32 219.48 -6.27 -37.59 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -2.73 Total: 1.76 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -0.55 Total: -8.03 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: -0.81 Total: -37.71 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.46 Total: -14.13 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -31.32 -6.27 -37.59 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260878938.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.490 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds