Wall clock time and date at job start Mon Mar 30 2020 02:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99845 * 2 1 4 4 H 1.48504 * 109.47077 * 269.99301 * 3 2 1 5 5 H 1.48498 * 109.47457 * 29.99575 * 3 2 1 6 6 H 1.48504 * 109.47179 * 149.99525 * 3 2 1 7 7 C 1.37870 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00261 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99950 * 0.02562 * 7 2 1 10 10 H 1.08992 * 109.47337 * 59.99803 * 9 7 2 11 11 C 1.53006 * 109.47131 * 299.99759 * 9 7 2 12 12 O 1.42895 * 109.47036 * 305.00351 * 11 9 7 13 13 N 1.46904 * 109.47209 * 180.02562 * 9 7 2 14 14 C 1.47479 * 110.99832 * 199.02975 * 13 9 7 15 15 C 1.53510 * 87.93279 * 138.70204 * 14 13 9 16 16 C 1.47477 * 110.99645 * 294.99775 * 13 9 7 17 17 H 0.97000 * 119.99824 * 0.02562 * 1 2 3 18 18 H 1.09001 * 109.47002 * 64.99829 * 11 9 7 19 19 H 1.08993 * 109.46955 * 185.00266 * 11 9 7 20 20 H 0.96700 * 113.99916 * 179.97438 * 12 11 9 21 21 H 1.09000 * 113.47607 * 253.46731 * 14 13 9 22 22 H 1.08998 * 113.47942 * 23.93209 * 14 13 9 23 23 H 1.08997 * 114.16771 * 220.33153 * 15 14 13 24 24 H 1.08997 * 114.17653 * 87.62177 * 15 14 13 25 25 H 1.09007 * 113.47897 * 336.06331 * 16 13 9 26 26 H 1.09001 * 113.48115 * 106.47263 * 16 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6247 -2.5571 -0.8896 11 6 0.3710 -2.5799 1.2495 12 8 1.1771 -2.3874 2.4135 13 7 2.2057 -3.6157 0.0018 14 6 1.5601 -4.8634 -0.4471 15 6 2.8319 -5.1665 -1.2516 16 6 2.9923 -3.6398 -1.2455 17 1 -0.4850 0.8401 -0.0004 18 1 -0.3944 -1.8051 1.2054 19 1 -0.1055 -3.5591 1.2955 20 1 0.6838 -2.4255 3.2443 21 1 1.3777 -5.5727 0.3602 22 1 0.6813 -4.6978 -1.0702 23 1 2.6454 -5.5917 -2.2377 24 1 3.5996 -5.6982 -0.6895 25 1 2.4956 -3.1476 -2.0817 26 1 4.0233 -3.3111 -1.1151 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260878938.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:50 Heat of formation + Delta-G solvation = -35.950909 kcal Electronic energy + Delta-G solvation = -10369.717377 eV Core-core repulsion = 8448.739698 eV Total energy + Delta-G solvation = -1920.977679 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.70658 -37.36732 -34.91352 -31.84387 -27.49741 -27.24515 -25.94271 -22.13784 -20.57236 -18.62115 -17.84137 -17.15609 -16.43004 -15.95316 -15.29115 -14.48885 -13.97566 -13.86159 -13.36042 -13.16949 -12.79737 -12.59736 -12.38310 -12.03266 -11.51932 -11.24953 -10.85334 -10.72146 -10.38630 -9.45677 -8.14395 -6.22859 1.38036 1.40007 1.51118 2.41213 3.14578 3.46242 3.68429 3.92266 4.14610 4.49909 4.62303 4.68214 4.81415 4.85803 4.95788 4.99898 5.14717 5.24662 5.39519 5.59965 5.85702 6.24662 6.52952 6.83030 7.28170 7.44548 8.91845 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.053171 B = 0.017329 C = 0.014799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.475474 B = 1615.443225 C = 1891.526623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.501 4.501 8 H 0.044 0.956 9 C 0.182 3.818 10 H -0.008 1.008 11 C 0.101 3.899 12 O -0.567 6.567 13 N -0.484 5.484 14 C -0.012 4.012 15 C -0.122 4.122 16 C 0.005 3.995 17 H 0.262 0.738 18 H 0.050 0.950 19 H 0.015 0.985 20 H 0.368 0.632 21 H 0.082 0.918 22 H 0.055 0.945 23 H 0.093 0.907 24 H 0.100 0.900 25 H 0.050 0.950 26 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.669 -6.541 -1.014 6.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.185 4.185 3 Si 0.786 3.214 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.201 1.201 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.074 3.926 10 H 0.010 0.990 11 C 0.023 3.977 12 O -0.370 6.370 13 N -0.207 5.207 14 C -0.142 4.142 15 C -0.159 4.159 16 C -0.124 4.124 17 H 0.071 0.929 18 H 0.068 0.932 19 H 0.033 0.967 20 H 0.212 0.788 21 H 0.100 0.900 22 H 0.073 0.927 23 H 0.112 0.888 24 H 0.118 0.882 25 H 0.068 0.932 26 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.303 -6.284 -0.805 6.741 hybrid contribution -0.860 1.121 -0.270 1.438 sum 1.444 -5.163 -1.075 5.468 Atomic orbital electron populations 1.69957 1.06928 1.27316 1.52217 1.25633 0.95805 1.02285 0.94822 0.85522 0.78473 0.79194 0.78203 1.19811 1.20559 1.20132 1.21072 0.92607 0.90916 1.49300 0.93750 1.19728 0.90682 0.90613 0.91566 0.99046 1.22020 0.93298 0.95972 0.86442 1.86624 1.38651 1.95900 1.15869 1.68945 1.16979 1.02714 1.32075 1.23794 0.97063 0.94522 0.98780 1.23065 0.97232 0.94674 1.00947 1.23504 0.99394 0.97048 0.92482 0.92876 0.93197 0.96726 0.78759 0.90007 0.92706 0.88811 0.88194 0.93170 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.90 11.37 21.44 0.24 -53.65 15 2 C 0.01 0.72 5.30 84.65 0.45 1.16 15 3 Si 0.96 45.60 29.54 68.60 2.03 47.63 15 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 15 5 H -0.28 -12.89 7.11 99.48 0.71 -12.19 15 6 H -0.28 -13.14 7.11 99.48 0.71 -12.43 15 7 C -0.50 -29.15 7.69 25.60 0.20 -28.95 15 8 H 0.04 2.66 7.63 -2.91 -0.02 2.64 15 9 C 0.18 9.68 1.46 44.17 0.06 9.75 15 10 H -0.01 -0.44 7.56 -2.39 -0.02 -0.46 15 11 C 0.10 5.10 6.47 71.98 0.47 5.56 15 12 O -0.57 -27.85 13.09 -148.98 -1.95 -29.79 15 13 N -0.48 -22.27 6.07 -907.03 -5.51 -27.78 15 14 C -0.01 -0.45 7.18 83.57 0.60 0.15 15 15 C -0.12 -3.65 8.47 30.94 0.26 -3.38 15 16 C 0.01 0.20 6.90 83.57 0.58 0.78 15 17 H 0.26 14.51 8.31 -92.71 -0.77 13.74 15 18 H 0.05 2.74 6.22 -2.39 -0.01 2.72 15 19 H 0.01 0.67 7.75 -2.39 -0.02 0.65 15 20 H 0.37 13.75 9.12 -74.06 -0.68 13.08 15 21 H 0.08 2.72 8.14 -2.39 -0.02 2.70 15 22 H 0.05 2.00 7.62 -2.39 -0.02 1.98 15 23 H 0.09 2.27 8.14 -2.39 -0.02 2.25 15 24 H 0.10 2.69 8.14 -2.39 -0.02 2.67 15 25 H 0.05 2.10 7.85 -2.38 -0.02 2.08 15 26 H 0.07 2.67 8.14 -2.39 -0.02 2.65 15 Total: -1.00 -66.07 219.48 -2.08 -68.16 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.49 Total: 10.37 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: 2.61 Total: -14.93 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -5.26 Total: -81.43 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -1.95 Total: -29.79 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -66.07 -2.08 -68.16 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260878938.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.208 kcal (2) G-P(sol) polarization free energy of solvation -66.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds