Wall clock time and date at job start Mon Mar 30 2020 02:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86798 * 120.00102 * 2 1 4 4 H 1.48497 * 109.47267 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46962 * 300.00470 * 3 2 1 6 6 H 1.48504 * 109.46968 * 60.00116 * 3 2 1 7 7 C 1.37875 * 119.99693 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99557 * 173.53507 * 7 2 1 9 9 C 1.50696 * 120.00116 * 353.53530 * 7 2 1 10 10 H 1.08996 * 109.47298 * 0.13610 * 9 7 2 11 11 C 1.53006 * 109.46981 * 120.13358 * 9 7 2 12 12 O 1.42903 * 109.46980 * 56.30333 * 11 9 7 13 13 N 1.46899 * 109.47164 * 240.13153 * 9 7 2 14 14 C 1.47479 * 111.00343 * 313.26926 * 13 9 7 15 15 C 1.53510 * 87.93159 * 138.70238 * 14 13 9 16 16 C 1.47482 * 110.99897 * 49.24227 * 13 9 7 17 17 H 0.96994 * 119.99495 * 185.50513 * 1 2 3 18 18 H 1.08999 * 109.46960 * 176.30120 * 11 9 7 19 19 H 1.09004 * 109.46937 * 296.30584 * 11 9 7 20 20 H 0.96698 * 113.99995 * 179.97438 * 12 11 9 21 21 H 1.08997 * 113.47593 * 253.47159 * 14 13 9 22 22 H 1.09000 * 113.47410 * 23.93272 * 14 13 9 23 23 H 1.09004 * 114.16694 * 220.33190 * 15 14 13 24 24 H 1.08994 * 114.34169 * 87.63997 * 15 14 13 25 25 H 1.08994 * 113.47482 * 336.06337 * 16 13 9 26 26 H 1.08998 * 113.47487 * 106.46660 * 16 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0794 -1.1970 -0.1058 9 6 1.2582 -2.4950 0.1458 10 1 0.1909 -2.2934 0.2368 11 6 1.5092 -3.3682 -1.0853 12 8 2.9150 -3.5613 -1.2538 13 7 1.7282 -3.1967 1.3478 14 6 3.2016 -3.2083 1.4109 15 6 3.0841 -2.9223 2.9145 16 6 1.7411 -2.2951 2.5149 17 1 -0.4849 -0.8362 0.0806 18 1 1.0233 -4.3346 -0.9504 19 1 1.1015 -2.8766 -1.9686 20 1 3.1484 -4.1072 -2.0170 21 1 3.6381 -4.1816 1.1868 22 1 3.6667 -2.3978 0.8497 23 1 3.8158 -2.2077 3.2914 24 1 2.9933 -3.8134 3.5355 25 1 1.8164 -1.2409 2.2484 26 1 0.9393 -2.4939 3.2260 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260878939.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:51 Heat of formation + Delta-G solvation = -35.319779 kcal Electronic energy + Delta-G solvation = -10582.492567 eV Core-core repulsion = 8661.542256 eV Total energy + Delta-G solvation = -1920.950311 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.86315 -37.41354 -35.20932 -31.70228 -27.33402 -26.59884 -26.41302 -22.47934 -20.66691 -18.55723 -18.31861 -16.83374 -16.31380 -15.69370 -15.44990 -15.06054 -14.35190 -14.20047 -13.03660 -12.87068 -12.60138 -12.34507 -12.01067 -11.69864 -11.52392 -11.17808 -11.04717 -10.67478 -10.55827 -9.27310 -8.60869 -6.33994 1.50123 1.56891 1.74509 2.51722 3.11438 3.60539 3.67592 3.83567 4.32374 4.42194 4.53621 4.57399 4.78130 4.90009 4.96646 5.05865 5.10569 5.38580 5.52960 5.72378 5.92813 6.23562 6.50430 6.60489 7.07569 7.44395 8.73614 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.042058 B = 0.021397 C = 0.018035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.592993 B = 1308.272520 C = 1552.163005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.022 4.022 3 Si 1.110 2.890 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.595 4.595 8 H 0.052 0.948 9 C 0.137 3.863 10 H 0.037 0.963 11 C 0.107 3.893 12 O -0.568 6.568 13 N -0.495 5.495 14 C 0.028 3.972 15 C -0.136 4.136 16 C 0.001 3.999 17 H 0.257 0.743 18 H 0.034 0.966 19 H 0.024 0.976 20 H 0.378 0.622 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.077 0.923 24 H 0.096 0.904 25 H 0.060 0.940 26 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.620 -4.262 1.442 7.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.221 4.221 3 Si 0.933 3.067 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.635 4.635 8 H 0.070 0.930 9 C 0.029 3.971 10 H 0.055 0.945 11 C 0.029 3.971 12 O -0.373 6.373 13 N -0.217 5.217 14 C -0.101 4.101 15 C -0.174 4.174 16 C -0.128 4.128 17 H 0.069 0.931 18 H 0.052 0.948 19 H 0.042 0.958 20 H 0.225 0.775 21 H 0.083 0.917 22 H 0.082 0.918 23 H 0.096 0.904 24 H 0.115 0.885 25 H 0.078 0.922 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.022 -2.904 1.873 6.096 hybrid contribution 0.025 -1.199 -0.839 1.463 sum 5.047 -4.103 1.034 6.586 Atomic orbital electron populations 1.70933 1.07790 1.30332 1.48709 1.27138 0.96464 1.06055 0.92455 0.83007 0.74372 0.71851 0.77428 1.19907 1.20800 1.20460 1.22347 0.95146 0.92629 1.53329 0.92988 1.20047 0.96089 0.92109 0.88806 0.94480 1.22015 0.81543 0.96405 0.97150 1.86577 1.23354 1.74996 1.52406 1.69090 1.11789 1.36734 1.04111 1.23354 0.90866 1.00743 0.95170 1.23112 0.96578 1.01050 0.96622 1.23544 0.97824 0.97631 0.93786 0.93072 0.94818 0.95788 0.77475 0.91715 0.91768 0.90419 0.88512 0.92188 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.24 13.65 21.45 0.29 -55.95 15 2 C -0.02 -1.23 5.05 84.65 0.43 -0.80 15 3 Si 1.11 50.14 29.91 68.60 2.05 52.19 15 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 15 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 15 6 H -0.28 -12.19 7.11 99.48 0.71 -11.48 15 7 C -0.60 -32.55 5.21 25.60 0.13 -32.42 15 8 H 0.05 2.94 5.93 -2.91 -0.02 2.93 15 9 C 0.14 7.03 2.92 44.17 0.13 7.16 15 10 H 0.04 2.11 5.64 -2.39 -0.01 2.09 15 11 C 0.11 4.78 6.84 71.98 0.49 5.27 15 12 O -0.57 -23.05 11.01 -148.98 -1.64 -24.69 15 13 N -0.49 -23.03 6.42 -906.99 -5.82 -28.86 15 14 C 0.03 1.17 5.71 83.58 0.48 1.64 15 15 C -0.14 -4.90 8.47 30.94 0.26 -4.64 15 16 C 0.00 0.07 7.55 83.58 0.63 0.70 15 17 H 0.26 15.63 6.26 -92.71 -0.58 15.05 15 18 H 0.03 1.38 8.14 -2.39 -0.02 1.36 15 19 H 0.02 1.08 8.14 -2.38 -0.02 1.07 15 20 H 0.38 10.90 9.12 -74.06 -0.68 10.22 15 21 H 0.06 2.56 8.11 -2.39 -0.02 2.54 15 22 H 0.06 3.05 5.06 -2.39 -0.01 3.04 15 23 H 0.08 2.52 8.14 -2.38 -0.02 2.50 15 24 H 0.10 3.02 8.14 -2.39 -0.02 3.00 15 25 H 0.06 3.03 6.02 -2.39 -0.01 3.02 15 26 H 0.06 2.53 8.14 -2.39 -0.02 2.51 15 Total: -1.00 -63.35 210.93 -1.87 -65.22 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.69 Total: 15.17 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: 2.55 Total: -23.08 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -5.53 Total: -84.81 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -1.64 Total: -24.69 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.05 Total: 52.19 kcal Total: -63.35 -1.87 -65.22 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260878939.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.903 kcal (2) G-P(sol) polarization free energy of solvation -63.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds