Wall clock time and date at job start Mon Mar 30 2020 01:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 110.85471 * 2 1 4 4 C 1.54601 * 110.79013 * 236.56206 * 2 1 3 5 5 C 1.51707 * 102.80611 * 216.36415 * 4 2 1 6 6 O 1.21297 * 126.23342 * 195.43347 * 5 4 2 7 7 N 1.34774 * 107.52316 * 15.58401 * 5 4 2 8 8 C 1.37103 * 124.16120 * 181.03382 * 7 5 4 9 9 H 1.08000 * 119.99866 * 5.99036 * 8 7 5 10 10 C 1.38949 * 120.00089 * 185.97787 * 8 7 5 11 11 N 1.31411 * 120.00372 * 177.12768 * 10 8 7 12 12 Si 1.86802 * 119.99774 * 357.13298 * 10 8 7 13 13 H 1.48496 * 109.47185 * 179.97438 * 12 10 8 14 14 H 1.48499 * 109.47255 * 59.99234 * 12 10 8 15 15 H 1.48507 * 109.47195 * 299.99616 * 12 10 8 16 16 O 1.41455 * 111.67334 * 0.77086 * 7 5 4 17 17 H 1.09001 * 109.46908 * 298.01874 * 1 2 3 18 18 H 1.08996 * 109.47358 * 58.01614 * 1 2 3 19 19 H 1.09002 * 109.47248 * 178.02420 * 1 2 3 20 20 H 1.09002 * 110.73570 * 334.92547 * 4 2 1 21 21 H 1.09001 * 110.73409 * 98.23781 * 4 2 1 22 22 H 0.96994 * 119.99402 * 355.17010 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9181 1.0186 0.0000 4 6 2.0788 -0.7964 -1.2061 5 6 3.3118 -1.4686 -0.6323 6 8 4.2079 -1.9844 -1.2665 7 7 3.2284 -1.3911 0.7106 8 6 4.1796 -1.8766 1.5704 9 1 5.1077 -2.2698 1.1826 10 6 3.9497 -1.8625 2.9407 11 7 4.8367 -2.3791 3.7612 12 14 2.3795 -1.1092 3.6165 13 1 2.3751 -1.2197 5.0973 14 1 1.2059 -1.8314 3.0631 15 1 2.3091 0.3219 3.2262 16 8 2.0414 -0.7420 1.1237 17 1 -0.3633 0.4828 0.9072 18 1 -0.3634 0.5443 -0.8716 19 1 -0.3634 -1.0271 -0.0354 20 1 1.3526 -1.5364 -1.5426 21 1 2.3523 -0.1248 -2.0198 22 1 5.6180 -2.8323 3.4077 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260880893.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:32 Heat of formation + Delta-G solvation = -28.497353 kcal Electronic energy + Delta-G solvation = -10207.124081 eV Core-core repulsion = 8150.636517 eV Total energy + Delta-G solvation = -2056.487563 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.65257 -36.32972 -33.87816 -31.93678 -30.60588 -27.99475 -24.09153 -21.58252 -19.58199 -18.56293 -16.51327 -15.88958 -14.82977 -14.30111 -13.74703 -13.58164 -12.89867 -12.57531 -12.38392 -12.14705 -11.92759 -11.23285 -10.87488 -10.15952 -9.87728 -9.42128 -9.38375 -8.74669 -7.94413 -6.89895 -4.05106 2.84640 3.30466 3.42924 3.62620 3.85832 4.32376 4.73358 4.93960 5.12788 5.21930 5.35373 5.46852 5.72876 5.87869 6.09325 6.19854 6.35733 7.62412 7.78467 8.18273 8.78233 9.09507 9.58813 10.55577 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.047605 B = 0.025245 C = 0.016903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.035271 B = 1108.844360 C = 1656.087548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 H 0.082 0.918 4 C -0.170 4.170 5 C 0.435 3.565 6 O -0.566 6.566 7 N -0.310 5.310 8 C -0.386 4.386 9 H 0.124 0.876 10 C 0.018 3.982 11 N -0.873 5.873 12 Si 1.087 2.913 13 H -0.290 1.290 14 H -0.274 1.274 15 H -0.282 1.282 16 O -0.176 6.176 17 H 0.065 0.935 18 H 0.075 0.925 19 H 0.067 0.933 20 H 0.098 0.902 21 H 0.097 0.903 22 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.567 5.549 -4.681 12.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.007 4.007 3 H 0.099 0.901 4 C -0.211 4.211 5 C 0.223 3.777 6 O -0.451 6.451 7 N -0.078 5.078 8 C -0.509 4.509 9 H 0.141 0.859 10 C -0.190 4.190 11 N -0.506 5.506 12 Si 0.917 3.083 13 H -0.218 1.218 14 H -0.201 1.201 15 H -0.210 1.210 16 O -0.178 6.178 17 H 0.084 0.916 18 H 0.094 0.906 19 H 0.086 0.914 20 H 0.117 0.883 21 H 0.115 0.885 22 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.952 5.625 -3.264 11.888 hybrid contribution 0.782 -0.183 -1.500 1.702 sum -9.169 5.442 -4.765 11.679 Atomic orbital electron populations 1.21877 0.92457 1.03310 1.02687 1.23351 0.95412 0.95863 0.86118 0.90056 1.22926 0.98708 1.00873 0.98615 1.20086 0.89050 0.87114 0.81417 1.90601 1.39827 1.51894 1.62761 1.46348 1.09776 1.46271 1.05363 1.21062 0.97796 1.42558 0.89500 0.85897 1.26481 1.04365 0.96495 0.91659 1.70858 1.11230 1.31882 1.36648 0.83129 0.73714 0.76847 0.74584 1.21838 1.20119 1.20972 1.90594 1.31123 1.65284 1.30763 0.91563 0.90618 0.91413 0.88335 0.88458 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.60 37.16 0.36 -1.50 14 2 C 0.05 0.86 4.38 -25.89 -0.11 0.74 14 3 H 0.08 1.28 8.14 -51.93 -0.42 0.86 14 4 C -0.17 -3.02 6.60 -26.55 -0.18 -3.19 14 5 C 0.44 10.88 8.15 -10.49 -0.09 10.80 14 6 O -0.57 -16.07 17.69 5.54 0.10 -15.97 14 7 N -0.31 -8.27 3.72 -10.63 -0.04 -8.31 14 8 C -0.39 -11.43 10.33 -14.93 -0.15 -11.58 14 9 H 0.12 3.89 7.94 -52.49 -0.42 3.47 14 10 C 0.02 0.51 5.50 -17.47 -0.10 0.42 14 11 N -0.87 -26.05 13.69 55.50 0.76 -25.29 14 12 Si 1.09 26.49 25.65 -169.99 -4.36 22.13 14 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 14 14 H -0.27 -6.42 6.98 56.52 0.39 -6.03 14 15 H -0.28 -6.58 6.97 56.52 0.39 -6.19 14 16 O -0.18 -4.07 6.59 -11.40 -0.08 -4.14 14 17 H 0.07 0.81 8.14 -51.93 -0.42 0.39 14 18 H 0.07 0.72 8.14 -51.93 -0.42 0.30 14 19 H 0.07 0.87 8.10 -51.93 -0.42 0.45 14 20 H 0.10 1.54 7.88 -51.93 -0.41 1.13 14 21 H 0.10 1.46 8.14 -51.93 -0.42 1.04 14 22 H 0.27 8.06 8.73 -40.82 -0.36 7.71 14 LS Contribution 198.17 15.07 2.99 2.99 Total: -1.00 -33.31 198.17 -3.00 -36.31 By element: Atomic # 1 Polarization: -1.30 SS G_CDS: -2.10 Total: -3.40 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -0.27 Total: -4.32 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.72 Total: -33.60 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: 0.02 Total: -20.11 kcal Atomic # 14 Polarization: 26.49 SS G_CDS: -4.36 Total: 22.13 kcal Total LS contribution 2.99 Total: 2.99 kcal Total: -33.31 -3.00 -36.31 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260880893.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.816 kcal (2) G-P(sol) polarization free energy of solvation -33.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds