Wall clock time and date at job start Mon Mar 30 2020 01:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.85228 * 2 1 4 4 C 1.54601 * 110.79677 * 123.43844 * 2 1 3 5 5 C 1.51717 * 103.02892 * 143.50742 * 4 2 1 6 6 O 1.21294 * 126.24215 * 164.70781 * 5 4 2 7 7 N 1.34783 * 107.51818 * 344.70533 * 5 4 2 8 8 C 1.37094 * 124.16025 * 178.82278 * 7 5 4 9 9 H 1.07997 * 120.00415 * 359.97438 * 8 7 5 10 10 C 1.38952 * 119.99507 * 180.02562 * 8 7 5 11 11 N 1.31412 * 120.00414 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99840 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46966 * 60.00145 * 12 10 8 14 14 H 1.48497 * 109.46902 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47272 * 300.00077 * 12 10 8 16 16 O 1.41461 * 111.67311 * 358.82144 * 7 5 4 17 17 H 1.09007 * 109.46939 * 296.56231 * 1 2 3 18 18 H 1.08997 * 109.47354 * 56.55996 * 1 2 3 19 19 H 1.09000 * 109.46954 * 176.56429 * 1 2 3 20 20 H 1.09002 * 110.73461 * 25.07162 * 4 2 1 21 21 H 1.09001 * 110.73220 * 261.94293 * 4 2 1 22 22 H 0.96998 * 120.00414 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9180 1.0186 0.0000 4 6 2.0789 -0.7964 1.2061 5 6 3.3112 -1.4737 0.6364 6 8 4.2036 -1.9921 1.2736 7 7 3.2334 -1.3942 -0.7068 8 6 4.1871 -1.8805 -1.5632 9 1 5.0697 -2.3635 -1.1707 10 6 4.0186 -1.7510 -2.9364 11 7 2.9450 -1.1629 -3.4142 12 14 5.3184 -2.4130 -4.1034 13 1 5.4702 -3.8758 -3.8969 14 1 4.9040 -2.1519 -5.5053 15 1 6.6138 -1.7383 -3.8357 16 8 2.0466 -0.7473 -1.1241 17 1 -0.3633 0.4596 0.9193 18 1 -0.3634 0.5663 -0.8575 19 1 -0.3633 -1.0258 -0.0616 20 1 1.3527 -1.5363 1.5426 21 1 2.3494 -0.1249 2.0209 22 1 2.8271 -1.0729 -4.3728 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260880895.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:33 Heat of formation + Delta-G solvation = -21.215493 kcal Electronic energy + Delta-G solvation = -10109.836064 eV Core-core repulsion = 8053.664266 eV Total energy + Delta-G solvation = -2056.171798 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.15923 -35.92986 -33.68673 -31.47811 -30.11500 -27.72622 -24.44560 -21.03799 -19.69729 -17.97707 -16.10516 -14.97251 -14.58334 -14.25588 -13.73699 -13.37033 -12.41841 -12.28353 -11.96393 -11.61455 -11.43951 -11.06551 -10.86468 -10.49377 -10.39698 -10.03921 -9.10713 -8.47621 -7.69661 -6.35033 -3.89746 3.15596 3.21219 3.23978 3.58939 3.75807 4.20526 5.06469 5.15262 5.28514 5.48585 5.63576 5.74937 5.97179 6.12314 6.37038 6.47533 6.64379 7.41169 7.87814 8.37930 8.96027 9.30853 9.84942 10.71921 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.060916 B = 0.018047 C = 0.014202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.536318 B = 1551.117500 C = 1971.023843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.037 3.963 3 H 0.072 0.928 4 C -0.171 4.171 5 C 0.422 3.578 6 O -0.580 6.580 7 N -0.295 5.295 8 C -0.321 4.321 9 H 0.125 0.875 10 C 0.039 3.961 11 N -0.843 5.843 12 Si 0.930 3.070 13 H -0.270 1.270 14 H -0.281 1.281 15 H -0.270 1.270 16 O -0.104 6.104 17 H 0.067 0.933 18 H 0.063 0.937 19 H 0.063 0.937 20 H 0.092 0.908 21 H 0.091 0.909 22 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.170 2.603 2.231 5.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.022 4.022 3 H 0.090 0.910 4 C -0.212 4.212 5 C 0.210 3.790 6 O -0.467 6.467 7 N -0.056 5.056 8 C -0.445 4.445 9 H 0.143 0.857 10 C -0.169 4.169 11 N -0.478 5.478 12 Si 0.756 3.244 13 H -0.195 1.195 14 H -0.206 1.206 15 H -0.195 1.195 16 O -0.107 6.107 17 H 0.086 0.914 18 H 0.082 0.918 19 H 0.082 0.918 20 H 0.111 0.889 21 H 0.109 0.891 22 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.900 2.381 2.016 4.995 hybrid contribution 0.291 -0.018 -0.579 0.649 sum -3.609 2.363 1.436 4.547 Atomic orbital electron populations 1.21761 0.92994 1.02935 1.01966 1.23370 0.95256 0.96058 0.87499 0.90983 1.22883 0.98750 1.00704 0.98847 1.20198 0.89205 0.87771 0.81784 1.90563 1.40415 1.52758 1.62956 1.45892 1.10048 1.45567 1.04136 1.19817 0.99712 1.37977 0.87024 0.85742 1.25396 0.97506 0.96455 0.97525 1.69992 1.25432 1.38494 1.13866 0.85951 0.80243 0.79562 0.78693 1.19501 1.20619 1.19532 1.91562 1.28528 1.63905 1.26694 0.91372 0.91774 0.91780 0.88942 0.89084 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.59 37.16 0.36 -1.75 14 2 C 0.04 0.73 4.41 -25.89 -0.11 0.62 14 3 H 0.07 1.34 8.14 -51.93 -0.42 0.92 14 4 C -0.17 -3.36 6.58 -26.54 -0.17 -3.54 14 5 C 0.42 11.10 8.15 -10.48 -0.09 11.01 14 6 O -0.58 -16.83 17.68 5.54 0.10 -16.73 14 7 N -0.29 -8.30 3.76 -10.63 -0.04 -8.34 14 8 C -0.32 -9.33 9.99 -14.93 -0.15 -9.48 14 9 H 0.13 3.58 7.71 -52.49 -0.40 3.18 14 10 C 0.04 1.07 5.50 -17.47 -0.10 0.98 14 11 N -0.84 -23.98 11.77 55.50 0.65 -23.33 14 12 Si 0.93 20.77 29.55 -169.99 -5.02 15.74 14 13 H -0.27 -5.93 7.11 56.52 0.40 -5.52 14 14 H -0.28 -6.11 7.11 56.52 0.40 -5.70 14 15 H -0.27 -5.92 7.11 56.52 0.40 -5.52 14 16 O -0.10 -2.72 9.87 -11.40 -0.11 -2.83 14 17 H 0.07 0.81 8.14 -51.92 -0.42 0.38 14 18 H 0.06 0.94 8.14 -51.93 -0.42 0.52 14 19 H 0.06 0.99 8.14 -51.93 -0.42 0.56 14 20 H 0.09 1.64 7.91 -51.93 -0.41 1.22 14 21 H 0.09 1.55 8.14 -51.93 -0.42 1.13 14 22 H 0.27 7.14 8.31 -40.82 -0.34 6.80 14 LS Contribution 202.81 15.07 3.06 3.06 Total: -1.00 -32.92 202.81 -3.70 -36.61 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: -2.06 Total: -2.03 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -0.26 Total: -2.16 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: 0.61 Total: -31.66 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.01 Total: -19.56 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 3.06 Total: 3.06 kcal Total: -32.92 -3.70 -36.61 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260880895.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.397 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds