Wall clock time and date at job start Mon Mar 30 2020 01:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.85228 * 2 1 4 4 C 1.54601 * 110.79677 * 123.43844 * 2 1 3 5 5 C 1.51717 * 103.02892 * 143.50742 * 4 2 1 6 6 O 1.21294 * 126.24215 * 164.70781 * 5 4 2 7 7 N 1.34783 * 107.51818 * 344.70533 * 5 4 2 8 8 C 1.37094 * 124.16025 * 178.82278 * 7 5 4 9 9 H 1.07997 * 120.00415 * 359.97438 * 8 7 5 10 10 C 1.38952 * 119.99507 * 180.02562 * 8 7 5 11 11 N 1.31412 * 120.00414 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99840 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46966 * 60.00145 * 12 10 8 14 14 H 1.48497 * 109.46902 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47272 * 300.00077 * 12 10 8 16 16 O 1.41461 * 111.67311 * 358.82144 * 7 5 4 17 17 H 1.09007 * 109.46939 * 296.56231 * 1 2 3 18 18 H 1.08997 * 109.47354 * 56.55996 * 1 2 3 19 19 H 1.09000 * 109.46954 * 176.56429 * 1 2 3 20 20 H 1.09002 * 110.73461 * 25.07162 * 4 2 1 21 21 H 1.09001 * 110.73220 * 261.94293 * 4 2 1 22 22 H 0.96998 * 120.00414 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9180 1.0186 0.0000 4 6 2.0789 -0.7964 1.2061 5 6 3.3112 -1.4737 0.6364 6 8 4.2036 -1.9921 1.2736 7 7 3.2334 -1.3942 -0.7068 8 6 4.1871 -1.8805 -1.5632 9 1 5.0697 -2.3635 -1.1707 10 6 4.0186 -1.7510 -2.9364 11 7 2.9450 -1.1629 -3.4142 12 14 5.3184 -2.4130 -4.1034 13 1 5.4702 -3.8758 -3.8969 14 1 4.9040 -2.1519 -5.5053 15 1 6.6138 -1.7383 -3.8357 16 8 2.0466 -0.7473 -1.1241 17 1 -0.3633 0.4596 0.9193 18 1 -0.3634 0.5663 -0.8575 19 1 -0.3633 -1.0258 -0.0616 20 1 1.3527 -1.5363 1.5426 21 1 2.3494 -0.1249 2.0209 22 1 2.8271 -1.0729 -4.3728 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260880895.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:33 Heat of formation + Delta-G solvation = -44.815702 kcal Electronic energy + Delta-G solvation = -10110.859446 eV Core-core repulsion = 8053.664266 eV Total energy + Delta-G solvation = -2057.195180 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.06276 -37.95592 -35.65137 -33.30982 -32.05802 -29.35937 -26.40536 -22.62325 -21.66308 -20.02626 -17.94494 -16.99510 -16.41633 -16.18739 -15.54510 -15.12873 -14.24595 -13.83749 -13.59564 -13.43073 -12.87329 -12.86880 -12.70471 -12.28942 -12.07400 -11.82031 -11.03690 -10.50454 -9.75522 -8.42981 -6.08444 1.35213 1.37717 1.50911 1.73126 1.82585 2.33285 3.08434 3.38034 3.70519 3.93611 4.12415 4.33857 4.69939 4.73055 5.02104 5.07715 5.25957 5.30850 5.82400 6.32873 6.87807 7.25670 7.78532 8.64520 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.060916 B = 0.018047 C = 0.014202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.536318 B = 1551.117500 C = 1971.023843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.028 3.972 3 H 0.081 0.919 4 C -0.152 4.152 5 C 0.402 3.598 6 O -0.621 6.621 7 N -0.315 5.315 8 C -0.366 4.366 9 H 0.112 0.888 10 C -0.001 4.001 11 N -0.870 5.870 12 Si 1.005 2.995 13 H -0.264 1.264 14 H -0.267 1.267 15 H -0.263 1.263 16 O -0.133 6.133 17 H 0.111 0.889 18 H 0.066 0.934 19 H 0.059 0.941 20 H 0.118 0.882 21 H 0.124 0.876 22 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.961 3.108 2.160 6.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.030 4.030 3 H 0.099 0.901 4 C -0.193 4.193 5 C 0.192 3.808 6 O -0.511 6.511 7 N -0.076 5.076 8 C -0.490 4.490 9 H 0.129 0.871 10 C -0.206 4.206 11 N -0.504 5.504 12 Si 0.825 3.175 13 H -0.189 1.189 14 H -0.191 1.191 15 H -0.188 1.188 16 O -0.136 6.136 17 H 0.130 0.870 18 H 0.085 0.915 19 H 0.078 0.922 20 H 0.136 0.864 21 H 0.142 0.858 22 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.723 2.905 1.952 5.878 hybrid contribution 0.478 -0.128 -0.504 0.706 sum -4.244 2.778 1.448 5.275 Atomic orbital electron populations 1.21790 0.89197 1.03291 1.04371 1.23869 0.98024 0.95656 0.85445 0.90117 1.22888 0.95774 1.01216 0.99377 1.21333 0.90618 0.87261 0.81588 1.90513 1.42453 1.54347 1.63770 1.46095 1.10671 1.45978 1.04830 1.20023 1.00554 1.40006 0.88427 0.87091 1.26379 0.99759 0.95957 0.98528 1.70099 1.27007 1.38730 1.14592 0.84858 0.77261 0.78960 0.76411 1.18878 1.19130 1.18807 1.91491 1.27580 1.64642 1.29929 0.87047 0.91526 0.92172 0.86425 0.85810 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 9.59 71.98 0.69 -2.78 14 2 C 0.03 1.05 4.41 31.14 0.14 1.19 14 3 H 0.08 2.83 8.14 -2.39 -0.02 2.81 14 4 C -0.15 -5.65 6.58 30.72 0.20 -5.44 14 5 C 0.40 21.25 8.15 87.98 0.72 21.97 14 6 O -0.62 -36.76 17.68 -3.07 -0.05 -36.82 14 7 N -0.31 -18.03 3.76 -305.93 -1.15 -19.18 14 8 C -0.37 -21.85 9.99 84.04 0.84 -21.01 14 9 H 0.11 6.67 7.71 -2.91 -0.02 6.65 14 10 C 0.00 -0.05 5.50 84.93 0.47 0.41 14 11 N -0.87 -49.62 11.77 21.66 0.25 -49.36 14 12 Si 1.00 42.54 29.55 68.60 2.03 44.57 14 13 H -0.26 -10.87 7.11 99.48 0.71 -10.16 14 14 H -0.27 -10.61 7.11 99.48 0.71 -9.90 14 15 H -0.26 -10.80 7.11 99.48 0.71 -10.09 14 16 O -0.13 -6.93 9.87 -38.47 -0.38 -7.31 14 17 H 0.11 2.07 8.14 -2.38 -0.02 2.05 14 18 H 0.07 1.77 8.14 -2.39 -0.02 1.75 14 19 H 0.06 1.68 8.14 -2.39 -0.02 1.66 14 20 H 0.12 3.79 7.91 -2.39 -0.02 3.77 14 21 H 0.12 3.78 8.14 -2.39 -0.02 3.76 14 22 H 0.28 14.50 8.31 -92.71 -0.77 13.73 14 Total: -1.00 -72.69 202.81 4.96 -67.73 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: 1.21 Total: 6.03 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 3.05 Total: -5.66 kcal Atomic # 7 Polarization: -67.64 SS G_CDS: -0.90 Total: -68.54 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -0.43 Total: -44.13 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -72.69 4.96 -67.73 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260880895.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.913 kcal (2) G-P(sol) polarization free energy of solvation -72.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds