Wall clock time and date at job start Mon Mar 30 2020 02:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 110.36892 * 2 1 4 4 H 1.08005 * 119.99829 * 119.27706 * 3 2 1 5 5 C 1.37872 * 119.99914 * 299.26946 * 3 2 1 6 6 N 1.31522 * 120.00111 * 0.02562 * 5 3 2 7 7 Si 1.86808 * 119.99974 * 180.02562 * 5 3 2 8 8 H 1.48499 * 109.47038 * 90.00366 * 7 5 3 9 9 H 1.48508 * 109.47073 * 210.00536 * 7 5 3 10 10 H 1.48496 * 109.47083 * 330.00118 * 7 5 3 11 11 C 1.54388 * 110.32306 * 237.81800 * 2 1 3 12 12 N 1.48558 * 104.59594 * 217.25148 * 11 2 1 13 13 C 1.48568 * 104.22068 * 39.48270 * 12 11 2 14 14 C 1.54268 * 110.32659 * 122.18473 * 2 1 3 15 15 H 1.09003 * 110.32138 * 237.79184 * 14 2 1 16 16 O 1.42897 * 110.32118 * 359.97438 * 14 2 1 17 17 H 1.08999 * 109.47197 * 180.73135 * 1 2 3 18 18 H 1.08998 * 109.46923 * 300.72639 * 1 2 3 19 19 H 1.08995 * 109.47440 * 60.72498 * 1 2 3 20 20 H 0.97003 * 119.99723 * 179.97438 * 6 5 3 21 21 H 1.08999 * 110.40932 * 98.47279 * 11 2 1 22 22 H 1.08999 * 110.50535 * 336.07890 * 11 2 1 23 23 H 1.00901 * 110.99875 * 159.03649 * 12 11 2 24 24 H 1.08998 * 110.41219 * 79.29956 * 13 12 11 25 25 H 1.09002 * 110.40575 * 201.73911 * 13 12 11 26 26 H 0.96695 * 114.00159 * 180.02562 * 16 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0545 1.4127 0.0000 4 1 2.6713 1.7598 0.8159 5 6 1.7472 2.2622 -1.0416 6 7 0.9958 1.8397 -2.0349 7 14 2.3980 4.0132 -1.0419 8 1 3.7150 4.0516 -1.7269 9 1 1.4420 4.8965 -1.7571 10 1 2.5541 4.4835 0.3579 11 6 2.0662 -0.7711 -1.2253 12 7 3.2693 -1.4829 -0.7226 13 6 2.8806 -1.9422 0.6358 14 6 2.0659 -0.7705 1.2243 15 1 2.7082 -0.1268 1.8253 16 8 0.9817 -1.2658 2.0124 17 1 -0.3633 -1.0276 0.0131 18 1 -0.3633 0.5251 0.8834 19 1 -0.3634 0.5025 -0.8964 20 1 0.7793 2.4375 -2.7675 21 1 2.3393 -0.0779 -2.0209 22 1 1.3237 -1.4848 -1.5822 23 1 3.5010 -2.2652 -1.3163 24 1 2.2648 -2.8393 0.5720 25 1 3.7671 -2.1309 1.2413 26 1 1.2587 -1.7589 2.7967 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260908623.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:18 Heat of formation + Delta-G solvation = -71.300558 kcal Electronic energy + Delta-G solvation = -10568.905038 eV Core-core repulsion = 8646.394483 eV Total energy + Delta-G solvation = -1922.510555 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.02770 -36.33770 -34.90867 -31.97690 -28.82790 -27.26512 -25.70765 -22.56332 -20.53549 -18.43594 -17.77127 -16.96498 -16.27257 -15.44357 -14.93385 -14.54133 -14.15536 -13.63325 -13.18376 -12.84830 -12.65576 -12.62569 -12.43172 -12.14905 -11.58970 -11.11152 -10.82443 -10.57323 -10.42065 -9.35520 -8.03432 -6.15531 1.43813 1.44737 1.53841 2.46394 3.20748 3.41298 3.94160 4.03362 4.19748 4.46281 4.60664 4.84369 4.97206 5.05935 5.25049 5.28862 5.43525 5.66758 5.79187 5.92441 6.21780 6.44811 6.62553 6.87353 7.11932 7.50025 8.99694 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.057927 B = 0.017806 C = 0.017037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.249948 B = 1572.134398 C = 1643.041838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.060 3.940 3 C -0.512 4.512 4 H 0.046 0.954 5 C 0.020 3.980 6 N -0.909 5.909 7 Si 0.951 3.049 8 H -0.278 1.278 9 H -0.283 1.283 10 H -0.272 1.272 11 C 0.068 3.932 12 N -0.668 5.668 13 C 0.015 3.985 14 C 0.102 3.898 15 H 0.049 0.951 16 O -0.571 6.571 17 H 0.021 0.979 18 H 0.020 0.980 19 H 0.051 0.949 20 H 0.260 0.740 21 H 0.065 0.935 22 H 0.006 0.994 23 H 0.335 0.665 24 H 0.049 0.951 25 H 0.093 0.907 26 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.502 -5.540 4.101 7.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.059 3.941 3 C -0.551 4.551 4 H 0.064 0.936 5 C -0.179 4.179 6 N -0.548 5.548 7 Si 0.777 3.223 8 H -0.204 1.204 9 H -0.209 1.209 10 H -0.197 1.197 11 C -0.061 4.061 12 N -0.297 5.297 13 C -0.115 4.115 14 C 0.043 3.957 15 H 0.067 0.933 16 O -0.377 6.377 17 H 0.040 0.960 18 H 0.039 0.961 19 H 0.070 0.930 20 H 0.069 0.931 21 H 0.084 0.916 22 H 0.025 0.975 23 H 0.150 0.850 24 H 0.067 0.933 25 H 0.111 0.889 26 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.482 -4.584 3.665 6.373 hybrid contribution -0.111 -0.025 -0.016 0.115 sum 2.372 -4.609 3.649 6.339 Atomic orbital electron populations 1.21287 0.97451 0.97176 0.99712 1.18923 0.92757 0.93229 0.89175 1.21285 1.30957 0.96608 1.06200 0.93557 1.25577 0.95301 1.01809 0.95232 1.70008 1.37803 1.36709 1.10289 0.85666 0.78085 0.80475 0.78031 1.20370 1.20913 1.19721 1.22770 0.89191 0.94838 0.99311 1.63649 1.35312 1.27137 1.03636 1.23569 0.99250 0.96425 0.92287 1.22729 0.86991 0.93370 0.92650 0.93305 1.86616 1.34435 1.75336 1.41361 0.96047 0.96059 0.93040 0.93100 0.91623 0.97532 0.84986 0.93258 0.88908 0.76975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.05 7.26 71.98 0.52 -4.53 15 2 C 0.06 3.04 0.68 -52.03 -0.04 3.00 15 3 C -0.51 -28.58 8.02 25.60 0.21 -28.37 15 4 H 0.05 2.59 7.36 -2.91 -0.02 2.57 15 5 C 0.02 1.09 4.95 84.65 0.42 1.50 15 6 N -0.91 -51.67 10.00 21.45 0.21 -51.46 15 7 Si 0.95 44.21 29.54 68.60 2.03 46.23 15 8 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 9 H -0.28 -12.90 7.11 99.48 0.71 -12.19 15 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 15 11 C 0.07 3.30 6.11 86.45 0.53 3.83 15 12 N -0.67 -26.94 7.62 -500.84 -3.82 -30.76 15 13 C 0.01 0.51 7.21 86.45 0.62 1.14 15 14 C 0.10 4.28 4.03 31.49 0.13 4.40 15 15 H 0.05 2.11 7.43 -2.39 -0.02 2.10 15 16 O -0.57 -21.48 11.55 -148.98 -1.72 -23.20 15 17 H 0.02 1.00 7.78 -2.39 -0.02 0.99 15 18 H 0.02 1.07 8.00 -2.39 -0.02 1.05 15 19 H 0.05 2.86 6.23 -2.39 -0.01 2.84 15 20 H 0.26 14.13 8.31 -92.71 -0.77 13.36 15 21 H 0.07 3.61 6.43 -2.39 -0.02 3.59 15 22 H 0.01 0.31 7.87 -2.39 -0.02 0.29 15 23 H 0.34 11.35 8.92 -89.69 -0.80 10.55 15 24 H 0.05 1.60 8.08 -2.39 -0.02 1.58 15 25 H 0.09 2.77 8.14 -2.39 -0.02 2.75 15 26 H 0.38 9.70 9.12 -74.06 -0.68 9.03 15 Total: -1.00 -62.22 211.96 -1.20 -63.41 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -0.29 Total: 14.80 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: 2.39 Total: -19.02 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -3.60 Total: -82.22 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -1.72 Total: -23.20 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -62.22 -1.20 -63.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260908623.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.886 kcal (2) G-P(sol) polarization free energy of solvation -62.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds