Wall clock time and date at job start Mon Mar 30 2020 02:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 110.36534 * 2 1 4 4 H 1.08004 * 120.00009 * 240.72722 * 3 2 1 5 5 C 1.37878 * 120.00056 * 60.72952 * 3 2 1 6 6 N 1.31506 * 119.99952 * 359.97438 * 5 3 2 7 7 Si 1.86798 * 119.99937 * 179.97438 * 5 3 2 8 8 H 1.48498 * 109.47312 * 89.99619 * 7 5 3 9 9 H 1.48500 * 109.47237 * 210.00059 * 7 5 3 10 10 H 1.48506 * 109.47161 * 329.99635 * 7 5 3 11 11 C 1.54378 * 110.32286 * 122.18269 * 2 1 3 12 12 N 1.48560 * 104.69549 * 142.81047 * 11 2 1 13 13 C 1.48555 * 104.22165 * 320.45136 * 12 11 2 14 14 C 1.54377 * 104.59533 * 39.48960 * 13 12 11 15 15 H 1.09004 * 110.32506 * 217.14790 * 14 13 12 16 16 O 1.42903 * 110.32807 * 95.04035 * 14 13 12 17 17 H 1.08994 * 109.47706 * 299.26958 * 1 2 3 18 18 H 1.09004 * 109.47235 * 59.27422 * 1 2 3 19 19 H 1.09000 * 109.47195 * 179.27162 * 1 2 3 20 20 H 0.97007 * 119.99847 * 179.97438 * 6 5 3 21 21 H 1.09002 * 110.41432 * 23.96964 * 11 2 1 22 22 H 1.09002 * 110.41130 * 261.64749 * 11 2 1 23 23 H 1.00903 * 110.99533 * 200.89549 * 12 11 2 24 24 H 1.09005 * 110.41154 * 158.26271 * 13 12 11 25 25 H 1.08998 * 110.41848 * 280.58433 * 13 12 11 26 26 H 0.96696 * 113.99798 * 61.44861 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0544 1.4128 0.0000 4 1 2.6711 1.7599 -0.8159 5 6 1.7470 2.2623 1.0416 6 7 0.9958 1.8398 2.0348 7 14 2.3977 4.0132 1.0419 8 1 1.4256 4.9027 0.3571 9 1 2.5865 4.4709 2.4420 10 1 3.6985 4.0581 0.3269 11 6 2.0662 -0.7711 1.2252 12 7 3.2706 -1.4827 0.7252 13 6 2.8841 -1.9444 -0.6329 14 6 2.0693 -0.7742 -1.2244 15 1 1.2445 -1.1538 -1.8274 16 8 2.9120 0.0692 -2.0123 17 1 -0.3634 0.5024 0.8964 18 1 -0.3634 0.5251 -0.8834 19 1 -0.3633 -1.0276 -0.0131 20 1 0.7798 2.4373 2.7678 21 1 1.3229 -1.4849 1.5803 22 1 2.3374 -0.0780 2.0217 23 1 3.5021 -2.2638 1.3205 24 1 3.7716 -2.1333 -1.2370 25 1 2.2707 -2.8430 -0.5687 26 1 3.3150 -0.3755 -2.7705 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260908624.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:19 Heat of formation + Delta-G solvation = -67.923905 kcal Electronic energy + Delta-G solvation = -10608.946646 eV Core-core repulsion = 8686.582514 eV Total energy + Delta-G solvation = -1922.364132 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.95464 -36.16458 -34.83862 -32.05703 -28.75933 -27.16885 -25.66828 -22.51878 -20.58228 -18.20474 -17.46628 -16.93018 -16.61946 -15.67564 -14.69051 -14.16699 -13.96211 -13.54912 -13.34378 -12.89440 -12.71952 -12.57026 -12.39364 -12.11331 -11.60327 -10.97522 -10.62243 -10.58945 -10.36236 -9.25415 -7.96246 -6.01820 1.42620 1.44158 1.54995 2.52293 3.29286 3.62357 3.76795 4.06227 4.28882 4.51959 4.64812 4.71552 4.90674 4.97532 5.19291 5.24793 5.45036 5.76166 5.81938 6.05074 6.21853 6.58110 6.70608 7.02323 7.28410 7.66287 9.07407 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.053775 B = 0.019499 C = 0.017976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.562514 B = 1435.651565 C = 1557.286334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.054 3.946 3 C -0.483 4.483 4 H 0.055 0.945 5 C 0.010 3.990 6 N -0.917 5.917 7 Si 0.945 3.055 8 H -0.280 1.280 9 H -0.286 1.286 10 H -0.279 1.279 11 C 0.067 3.933 12 N -0.672 5.672 13 C 0.013 3.987 14 C 0.101 3.899 15 H 0.057 0.943 16 O -0.559 6.559 17 H 0.060 0.940 18 H 0.027 0.973 19 H 0.034 0.966 20 H 0.255 0.745 21 H 0.013 0.987 22 H 0.060 0.940 23 H 0.332 0.668 24 H 0.090 0.910 25 H 0.055 0.945 26 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.326 -6.645 -4.408 8.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.053 3.947 3 C -0.521 4.521 4 H 0.074 0.926 5 C -0.187 4.187 6 N -0.558 5.558 7 Si 0.772 3.228 8 H -0.206 1.206 9 H -0.212 1.212 10 H -0.205 1.205 11 C -0.062 4.062 12 N -0.301 5.301 13 C -0.117 4.117 14 C 0.042 3.958 15 H 0.075 0.925 16 O -0.364 6.364 17 H 0.079 0.921 18 H 0.046 0.954 19 H 0.053 0.947 20 H 0.064 0.936 21 H 0.031 0.969 22 H 0.079 0.921 23 H 0.147 0.853 24 H 0.108 0.892 25 H 0.073 0.927 26 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.491 -5.536 -3.984 6.982 hybrid contribution -0.277 -0.128 0.092 0.318 sum 1.215 -5.664 -3.892 6.979 Atomic orbital electron populations 1.21712 0.97140 0.98061 1.01171 1.19076 0.92115 0.94278 0.89252 1.21176 1.29209 0.96303 1.05424 0.92639 1.25548 0.96032 1.01381 0.95699 1.69983 1.39032 1.36268 1.10483 0.85765 0.78559 0.81734 0.76717 1.20571 1.21170 1.20463 1.22782 0.89263 0.94852 0.99315 1.63653 1.35726 1.27033 1.03712 1.23619 0.99437 0.96259 0.92364 1.22771 0.90874 0.89578 0.92566 0.92491 1.86821 1.66245 1.40166 1.43196 0.92143 0.95379 0.94711 0.93552 0.96901 0.92138 0.85338 0.89219 0.92705 0.78229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.85 8.02 71.98 0.58 -5.27 15 2 C 0.05 2.66 0.69 -51.93 -0.04 2.63 15 3 C -0.48 -27.55 7.74 25.60 0.20 -27.35 15 4 H 0.06 3.33 6.19 -2.91 -0.02 3.31 15 5 C 0.01 0.58 4.95 84.66 0.42 1.00 15 6 N -0.92 -52.68 10.00 21.45 0.21 -52.47 15 7 Si 0.94 46.18 29.54 68.60 2.03 48.20 15 8 H -0.28 -13.33 7.11 99.48 0.71 -12.62 15 9 H -0.29 -13.66 7.11 99.48 0.71 -12.95 15 10 H -0.28 -13.74 7.11 99.48 0.71 -13.03 15 11 C 0.07 3.21 6.11 86.45 0.53 3.74 15 12 N -0.67 -27.35 7.62 -500.87 -3.82 -31.17 15 13 C 0.01 0.44 7.20 86.45 0.62 1.06 15 14 C 0.10 4.14 4.05 31.60 0.13 4.27 15 15 H 0.06 2.10 7.72 -2.38 -0.02 2.08 15 16 O -0.56 -23.32 11.07 -148.98 -1.65 -24.97 15 17 H 0.06 3.19 6.23 -2.39 -0.01 3.18 15 18 H 0.03 1.30 8.14 -2.38 -0.02 1.28 15 19 H 0.03 1.41 8.14 -2.39 -0.02 1.39 15 20 H 0.26 14.16 8.31 -92.70 -0.77 13.39 15 21 H 0.01 0.58 7.86 -2.39 -0.02 0.56 15 22 H 0.06 3.36 6.42 -2.39 -0.02 3.35 15 23 H 0.33 11.29 8.92 -89.69 -0.80 10.49 15 24 H 0.09 2.70 8.06 -2.38 -0.02 2.68 15 25 H 0.05 1.62 8.14 -2.39 -0.02 1.60 15 26 H 0.37 10.78 9.09 -74.06 -0.67 10.11 15 Total: -1.00 -64.46 211.56 -1.08 -65.53 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -0.29 Total: 14.81 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: 2.44 Total: -19.93 kcal Atomic # 7 Polarization: -80.03 SS G_CDS: -3.60 Total: -83.64 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -1.65 Total: -24.97 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -64.46 -1.08 -65.53 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260908624.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.392 kcal (2) G-P(sol) polarization free energy of solvation -64.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds