Wall clock time and date at job start Mon Mar 30 2020 02:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50694 * 110.28628 * 2 1 4 4 H 1.08002 * 120.00179 * 120.69708 * 3 2 1 5 5 C 1.37879 * 120.00472 * 300.70026 * 3 2 1 6 6 N 1.31514 * 119.99350 * 359.97438 * 5 3 2 7 7 Si 1.86798 * 120.00608 * 179.97438 * 5 3 2 8 8 H 1.48490 * 109.47339 * 179.97438 * 7 5 3 9 9 H 1.48493 * 109.47239 * 300.00306 * 7 5 3 10 10 H 1.48504 * 109.46636 * 59.99865 * 7 5 3 11 11 C 1.54379 * 110.32258 * 237.87275 * 2 1 3 12 12 N 1.48828 * 104.46418 * 217.17454 * 11 2 1 13 13 C 1.48562 * 104.23590 * 39.50081 * 12 11 2 14 14 C 1.54258 * 110.31976 * 122.12662 * 2 1 3 15 15 H 1.08997 * 110.32835 * 0.10429 * 14 2 1 16 16 O 1.42902 * 110.32157 * 237.89345 * 14 2 1 17 17 H 1.09000 * 109.46960 * 59.30172 * 1 2 3 18 18 H 1.08994 * 109.46635 * 179.29612 * 1 2 3 19 19 H 1.08995 * 109.47020 * 299.29780 * 1 2 3 20 20 H 0.97005 * 119.99661 * 179.97438 * 6 5 3 21 21 H 1.08997 * 110.41519 * 335.92577 * 11 2 1 22 22 H 1.08995 * 110.41020 * 98.37098 * 11 2 1 23 23 H 1.00901 * 110.96892 * 159.05475 * 12 11 2 24 24 H 1.09001 * 110.40945 * 201.71208 * 13 12 11 25 25 H 1.09001 * 110.50820 * 79.31923 * 13 12 11 26 26 H 0.96708 * 113.99819 * 179.97438 * 16 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0526 1.4135 0.0000 4 1 2.6876 1.7545 0.8042 5 6 1.7198 2.2715 -1.0267 6 7 0.9468 1.8562 -2.0062 7 14 2.3669 4.0239 -1.0263 8 1 1.8687 4.7358 -2.2305 9 1 1.8953 4.7254 0.1945 10 1 3.8517 4.0032 -1.0430 11 6 2.0662 -0.7699 -1.2260 12 7 3.2722 -1.4806 -0.7204 13 6 2.8829 -1.9400 0.6377 14 6 2.0658 -0.7693 1.2251 15 1 1.2388 -1.1484 1.8254 16 8 2.9060 0.0761 2.0134 17 1 -0.3633 0.5246 -0.8837 18 1 -0.3632 -1.0276 -0.0126 19 1 -0.3633 0.5029 0.8962 20 1 0.7124 2.4600 -2.7284 21 1 1.3237 -1.4846 -1.5807 22 1 2.3377 -0.0761 -2.0216 23 1 3.5056 -2.2627 -1.3137 24 1 3.7690 -2.1272 1.2442 25 1 2.2689 -2.8385 0.5755 26 1 3.2717 -0.3545 2.7983 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260908628.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:22 Heat of formation + Delta-G solvation = -42.551243 kcal Electronic energy + Delta-G solvation = -10607.709031 eV Core-core repulsion = 8686.445139 eV Total energy + Delta-G solvation = -1921.263891 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.23070 -34.45013 -32.88791 -30.09185 -27.10165 -25.10237 -23.76962 -20.84166 -18.69116 -16.40012 -15.74294 -14.94479 -14.80173 -13.85563 -12.85529 -12.46224 -12.22886 -11.65755 -11.45390 -11.01571 -10.87094 -10.61760 -10.48659 -10.15684 -9.67393 -9.12167 -8.98829 -8.60634 -8.24076 -7.60450 -5.83350 -3.83953 3.45208 3.47514 3.53306 4.59202 5.19233 5.29247 5.43230 5.64631 5.95383 6.04152 6.19328 6.52459 6.68020 6.75149 7.01131 7.10263 7.37906 7.61732 7.76808 7.97707 8.22687 8.26688 8.51328 8.78447 9.23155 9.79223 11.22397 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.053902 B = 0.019478 C = 0.017950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.332459 B = 1437.199576 C = 1559.544340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.074 3.926 3 C -0.467 4.467 4 H 0.075 0.925 5 C 0.052 3.948 6 N -0.903 5.903 7 Si 0.895 3.105 8 H -0.291 1.291 9 H -0.280 1.280 10 H -0.279 1.279 11 C 0.058 3.942 12 N -0.657 5.657 13 C 0.006 3.994 14 C 0.104 3.896 15 H 0.039 0.961 16 O -0.531 6.531 17 H 0.091 0.909 18 H 0.006 0.994 19 H 0.030 0.970 20 H 0.257 0.743 21 H 0.006 0.994 22 H 0.098 0.902 23 H 0.313 0.687 24 H 0.067 0.933 25 H 0.027 0.973 26 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.985 -5.649 3.638 6.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.073 3.927 3 C -0.505 4.505 4 H 0.093 0.907 5 C -0.146 4.146 6 N -0.544 5.544 7 Si 0.723 3.277 8 H -0.217 1.217 9 H -0.206 1.206 10 H -0.204 1.204 11 C -0.071 4.071 12 N -0.284 5.284 13 C -0.124 4.124 14 C 0.045 3.955 15 H 0.057 0.943 16 O -0.333 6.333 17 H 0.109 0.891 18 H 0.025 0.975 19 H 0.049 0.951 20 H 0.067 0.933 21 H 0.025 0.975 22 H 0.116 0.884 23 H 0.126 0.874 24 H 0.085 0.915 25 H 0.045 0.955 26 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.157 -4.526 3.180 5.651 hybrid contribution -0.207 -0.398 0.140 0.470 sum 0.951 -4.923 3.319 6.013 Atomic orbital electron populations 1.21887 0.97381 0.96984 1.02858 1.18893 0.91763 0.95189 0.86819 1.20961 1.28339 0.94053 1.07166 0.90741 1.24956 0.95523 0.98424 0.95729 1.69858 1.37413 1.35561 1.11520 0.86612 0.79285 0.84890 0.76866 1.21721 1.20598 1.20442 1.23183 0.88122 0.95177 1.00591 1.63861 1.36755 1.25666 1.02161 1.23599 0.98352 0.96543 0.93936 1.22755 0.89772 0.89489 0.93507 0.94345 1.86916 1.67434 1.39985 1.38966 0.89082 0.97461 0.95064 0.93324 0.97549 0.88363 0.87390 0.91499 0.95480 0.81240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 8.02 37.16 0.30 -2.94 15 2 C 0.07 1.88 0.68 -154.28 -0.11 1.77 15 3 C -0.47 -13.30 7.73 -34.44 -0.27 -13.57 15 4 H 0.07 2.22 6.17 -52.49 -0.32 1.90 15 5 C 0.05 1.47 4.95 -17.82 -0.09 1.39 15 6 N -0.90 -25.67 10.00 55.43 0.55 -25.11 15 7 Si 0.89 22.37 29.54 -169.99 -5.02 17.35 15 8 H -0.29 -7.17 7.11 56.52 0.40 -6.77 15 9 H -0.28 -6.96 7.11 56.52 0.40 -6.56 15 10 H -0.28 -7.02 7.11 56.52 0.40 -6.62 15 11 C 0.06 1.41 6.15 -2.03 -0.01 1.39 15 12 N -0.66 -14.11 7.63 -109.45 -0.84 -14.94 15 13 C 0.01 0.11 7.21 -2.18 -0.02 0.10 15 14 C 0.10 2.26 4.04 -25.35 -0.10 2.16 15 15 H 0.04 0.77 7.71 -51.93 -0.40 0.37 15 16 O -0.53 -11.60 11.05 -35.23 -0.39 -11.99 15 17 H 0.09 2.42 6.07 -51.93 -0.32 2.10 15 18 H 0.01 0.14 8.12 -51.93 -0.42 -0.28 15 19 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 20 H 0.26 7.07 8.31 -40.82 -0.34 6.73 15 21 H 0.01 0.15 7.85 -51.93 -0.41 -0.26 15 22 H 0.10 2.70 6.55 -51.93 -0.34 2.36 15 23 H 0.31 5.73 8.92 -39.29 -0.35 5.38 15 24 H 0.07 1.16 8.08 -51.93 -0.42 0.74 15 25 H 0.03 0.47 8.14 -51.93 -0.42 0.04 15 26 H 0.34 5.46 9.12 45.56 0.42 5.88 15 LS Contribution 211.51 15.07 3.19 3.19 Total: -1.00 -30.55 211.51 -5.34 -35.89 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -2.54 Total: 5.31 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -0.29 Total: -9.70 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: -0.28 Total: -40.05 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -0.39 Total: -11.99 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 3.19 Total: 3.19 kcal Total: -30.55 -5.34 -35.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260908628.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.657 kcal (2) G-P(sol) polarization free energy of solvation -30.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds