Wall clock time and date at job start Mon Mar 30 2020 02:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50694 * 110.28628 * 2 1 4 4 H 1.08002 * 120.00179 * 120.69708 * 3 2 1 5 5 C 1.37879 * 120.00472 * 300.70026 * 3 2 1 6 6 N 1.31514 * 119.99350 * 359.97438 * 5 3 2 7 7 Si 1.86798 * 120.00608 * 179.97438 * 5 3 2 8 8 H 1.48490 * 109.47339 * 179.97438 * 7 5 3 9 9 H 1.48493 * 109.47239 * 300.00306 * 7 5 3 10 10 H 1.48504 * 109.46636 * 59.99865 * 7 5 3 11 11 C 1.54379 * 110.32258 * 237.87275 * 2 1 3 12 12 N 1.48828 * 104.46418 * 217.17454 * 11 2 1 13 13 C 1.48562 * 104.23590 * 39.50081 * 12 11 2 14 14 C 1.54258 * 110.31976 * 122.12662 * 2 1 3 15 15 H 1.08997 * 110.32835 * 0.10429 * 14 2 1 16 16 O 1.42902 * 110.32157 * 237.89345 * 14 2 1 17 17 H 1.09000 * 109.46960 * 59.30172 * 1 2 3 18 18 H 1.08994 * 109.46635 * 179.29612 * 1 2 3 19 19 H 1.08995 * 109.47020 * 299.29780 * 1 2 3 20 20 H 0.97005 * 119.99661 * 179.97438 * 6 5 3 21 21 H 1.08997 * 110.41519 * 335.92577 * 11 2 1 22 22 H 1.08995 * 110.41020 * 98.37098 * 11 2 1 23 23 H 1.00901 * 110.96892 * 159.05475 * 12 11 2 24 24 H 1.09001 * 110.40945 * 201.71208 * 13 12 11 25 25 H 1.09001 * 110.50820 * 79.31923 * 13 12 11 26 26 H 0.96708 * 113.99819 * 179.97438 * 16 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0526 1.4135 0.0000 4 1 2.6876 1.7545 0.8042 5 6 1.7198 2.2715 -1.0267 6 7 0.9468 1.8562 -2.0062 7 14 2.3669 4.0239 -1.0263 8 1 1.8687 4.7358 -2.2305 9 1 1.8953 4.7254 0.1945 10 1 3.8517 4.0032 -1.0430 11 6 2.0662 -0.7699 -1.2260 12 7 3.2722 -1.4806 -0.7204 13 6 2.8829 -1.9400 0.6377 14 6 2.0658 -0.7693 1.2251 15 1 1.2388 -1.1484 1.8254 16 8 2.9060 0.0761 2.0134 17 1 -0.3633 0.5246 -0.8837 18 1 -0.3632 -1.0276 -0.0126 19 1 -0.3633 0.5029 0.8962 20 1 0.7124 2.4600 -2.7284 21 1 1.3237 -1.4846 -1.5807 22 1 2.3377 -0.0761 -2.0216 23 1 3.5056 -2.2627 -1.3137 24 1 3.7690 -2.1272 1.2442 25 1 2.2689 -2.8385 0.5755 26 1 3.2717 -0.3545 2.7983 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260908628.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:21 Heat of formation + Delta-G solvation = -67.575707 kcal Electronic energy + Delta-G solvation = -10608.794173 eV Core-core repulsion = 8686.445139 eV Total energy + Delta-G solvation = -1922.349033 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.95766 -36.16005 -34.84377 -32.03993 -28.76494 -27.17157 -25.66066 -22.52153 -20.57553 -18.22114 -17.48393 -16.92252 -16.60355 -15.67186 -14.68168 -14.16711 -13.97378 -13.52929 -13.32872 -12.88452 -12.72408 -12.59011 -12.37334 -12.11630 -11.59350 -11.00287 -10.60925 -10.59512 -10.35434 -9.26044 -7.95615 -6.01692 1.43787 1.45420 1.52775 2.52369 3.29177 3.61553 3.77120 4.06195 4.30055 4.51770 4.64400 4.71657 4.91374 4.97881 5.19743 5.25479 5.44645 5.76345 5.81892 6.04311 6.23289 6.58185 6.70307 7.02250 7.28596 7.66499 9.07418 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.053902 B = 0.019478 C = 0.017950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.332459 B = 1437.199576 C = 1559.544340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.053 3.947 3 C -0.484 4.484 4 H 0.056 0.944 5 C 0.010 3.990 6 N -0.916 5.916 7 Si 0.945 3.055 8 H -0.285 1.285 9 H -0.278 1.278 10 H -0.282 1.282 11 C 0.068 3.932 12 N -0.673 5.673 13 C 0.013 3.987 14 C 0.102 3.898 15 H 0.058 0.942 16 O -0.558 6.558 17 H 0.063 0.937 18 H 0.033 0.967 19 H 0.026 0.974 20 H 0.255 0.745 21 H 0.014 0.986 22 H 0.058 0.942 23 H 0.331 0.669 24 H 0.089 0.911 25 H 0.055 0.945 26 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.312 -6.619 4.408 8.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.052 3.948 3 C -0.522 4.522 4 H 0.074 0.926 5 C -0.187 4.187 6 N -0.557 5.557 7 Si 0.772 3.228 8 H -0.211 1.211 9 H -0.203 1.203 10 H -0.208 1.208 11 C -0.061 4.061 12 N -0.301 5.301 13 C -0.117 4.117 14 C 0.042 3.958 15 H 0.075 0.925 16 O -0.364 6.364 17 H 0.082 0.918 18 H 0.052 0.948 19 H 0.045 0.955 20 H 0.065 0.935 21 H 0.032 0.968 22 H 0.077 0.923 23 H 0.146 0.854 24 H 0.107 0.893 25 H 0.073 0.927 26 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.494 -5.516 3.965 6.956 hybrid contribution -0.285 -0.123 -0.062 0.317 sum 1.209 -5.639 3.904 6.965 Atomic orbital electron populations 1.21739 0.97140 0.98131 1.01269 1.19019 0.92167 0.94289 0.89277 1.21154 1.28275 0.96162 1.06636 0.92621 1.25553 0.95979 1.01411 0.95710 1.69970 1.37898 1.36223 1.11655 0.85825 0.78403 0.81537 0.76999 1.21051 1.20321 1.20792 1.22828 0.89271 0.94853 0.99194 1.63728 1.35595 1.27104 1.03705 1.23611 0.99432 0.96281 0.92333 1.22701 0.90873 0.89547 0.92631 0.92451 1.86828 1.67715 1.41356 1.40480 0.91815 0.94816 0.95451 0.93535 0.96765 0.92323 0.85361 0.89261 0.92711 0.78239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.96 8.02 71.98 0.58 -5.38 15 2 C 0.05 2.65 0.68 -52.03 -0.04 2.61 15 3 C -0.48 -27.62 7.73 25.60 0.20 -27.42 15 4 H 0.06 3.33 6.17 -2.91 -0.02 3.32 15 5 C 0.01 0.58 4.95 84.66 0.42 1.00 15 6 N -0.92 -52.66 10.00 21.45 0.21 -52.45 15 7 Si 0.94 46.16 29.54 68.60 2.03 48.19 15 8 H -0.28 -13.50 7.11 99.48 0.71 -12.80 15 9 H -0.28 -13.33 7.11 99.48 0.71 -12.62 15 10 H -0.28 -13.82 7.11 99.48 0.71 -13.11 15 11 C 0.07 3.24 6.15 86.40 0.53 3.77 15 12 N -0.67 -27.37 7.63 -500.20 -3.82 -31.19 15 13 C 0.01 0.45 7.21 86.45 0.62 1.07 15 14 C 0.10 4.16 4.04 31.49 0.13 4.28 15 15 H 0.06 2.11 7.71 -2.39 -0.02 2.09 15 16 O -0.56 -23.28 11.05 -148.98 -1.65 -24.92 15 17 H 0.06 3.38 6.07 -2.39 -0.01 3.37 15 18 H 0.03 1.38 8.12 -2.39 -0.02 1.36 15 19 H 0.03 1.26 8.14 -2.39 -0.02 1.24 15 20 H 0.26 14.20 8.31 -92.70 -0.77 13.43 15 21 H 0.01 0.64 7.85 -2.39 -0.02 0.62 15 22 H 0.06 3.25 6.55 -2.39 -0.02 3.24 15 23 H 0.33 11.29 8.92 -89.69 -0.80 10.49 15 24 H 0.09 2.70 8.08 -2.39 -0.02 2.68 15 25 H 0.05 1.62 8.14 -2.39 -0.02 1.60 15 26 H 0.37 10.74 9.12 -74.05 -0.68 10.06 15 Total: -1.00 -64.40 211.51 -1.07 -65.47 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -0.29 Total: 14.96 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 2.44 Total: -20.06 kcal Atomic # 7 Polarization: -80.03 SS G_CDS: -3.60 Total: -83.63 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -1.65 Total: -24.92 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -64.40 -1.07 -65.47 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260908628.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.104 kcal (2) G-P(sol) polarization free energy of solvation -64.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds