Wall clock time and date at job start Mon Mar 30 2020 02:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 119.99993 * 2 1 4 4 H 1.48497 * 109.47364 * 240.00031 * 3 2 1 5 5 H 1.48503 * 109.47085 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47409 * 119.99956 * 3 2 1 7 7 C 1.37884 * 120.00193 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99755 * 185.32118 * 7 2 1 9 9 C 1.50697 * 119.99847 * 5.32551 * 7 2 1 10 10 C 1.52997 * 112.85217 * 65.13157 * 9 7 2 11 11 O 1.42907 * 109.47051 * 62.65239 * 10 9 7 12 12 N 1.46293 * 114.00057 * 180.02562 * 11 10 9 13 13 C 1.53782 * 113.61515 * 196.32999 * 9 7 2 14 14 C 1.53954 * 87.01914 * 89.22636 * 13 9 7 15 15 C 1.53781 * 87.11152 * 25.36449 * 14 13 9 16 16 H 0.96994 * 120.00582 * 359.97438 * 1 2 3 17 17 H 1.08999 * 109.47258 * 302.65162 * 10 9 7 18 18 H 1.09001 * 109.47373 * 182.64757 * 10 9 7 19 19 H 1.00898 * 111.00214 * 56.04634 * 12 11 10 20 20 H 1.00899 * 110.99855 * 180.02562 * 12 11 10 21 21 H 1.08997 * 113.61871 * 203.74724 * 13 9 7 22 22 H 1.09003 * 113.61041 * 334.65478 * 13 9 7 23 23 H 1.09001 * 113.53891 * 270.81303 * 14 13 9 24 24 H 1.09005 * 113.66975 * 139.93371 * 14 13 9 25 25 H 1.09002 * 113.61535 * 220.08963 * 15 14 13 26 26 H 1.09005 * 113.61159 * 89.18369 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0811 -1.1960 0.0873 9 6 1.2560 -2.4964 -0.1200 10 6 0.5513 -2.6540 -1.4688 11 8 1.5241 -2.6704 -2.5155 12 7 0.9546 -2.8172 -3.8550 13 6 2.0866 -3.7245 0.2882 14 6 1.5674 -3.4995 1.7200 15 6 0.3524 -2.8015 1.0864 16 1 -0.4851 0.8399 0.0004 17 1 -0.1325 -1.8189 -1.6213 18 1 -0.0090 -3.5889 -1.4790 19 1 0.2767 -2.0934 -4.0411 20 1 1.6791 -2.8237 -4.5572 21 1 1.7398 -4.6552 -0.1607 22 1 3.1618 -3.5783 0.1848 23 1 2.1951 -2.8324 2.3109 24 1 1.3168 -4.4215 2.2446 25 1 0.0296 -1.9113 1.6263 26 1 -0.4695 -3.4794 0.8560 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260918636.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:26 Heat of formation + Delta-G solvation = 13.243908 kcal Electronic energy + Delta-G solvation = -10368.882544 eV Core-core repulsion = 8450.038112 eV Total energy + Delta-G solvation = -1918.844432 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.99046 -35.17619 -32.19014 -29.35662 -26.70203 -24.78060 -24.21243 -21.17631 -18.31991 -16.00172 -15.52021 -15.15470 -14.67434 -13.89142 -13.76627 -12.87100 -12.32655 -11.71826 -11.35279 -10.94883 -10.88748 -10.66444 -10.09720 -9.85285 -9.69813 -9.05793 -8.88324 -8.55613 -8.35946 -8.02481 -6.01166 -4.04108 3.31371 3.35490 3.39442 3.83455 4.43055 5.28074 5.93669 6.03943 6.08883 6.17488 6.57242 6.67090 6.68067 6.83730 6.98435 7.05028 7.23608 7.35740 7.50533 7.63886 7.86069 7.93387 8.19797 8.52178 8.94181 9.58767 11.05892 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.034842 B = 0.022586 C = 0.016361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.427892 B = 1239.395351 C = 1710.988603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.485 4.485 8 H 0.057 0.943 9 C 0.075 3.925 10 C 0.081 3.919 11 O -0.221 6.221 12 N -0.698 5.698 13 C -0.138 4.138 14 C -0.133 4.133 15 C -0.117 4.117 16 H 0.260 0.740 17 H 0.061 0.939 18 H 0.016 0.984 19 H 0.330 0.670 20 H 0.350 0.650 21 H 0.056 0.944 22 H 0.051 0.949 23 H 0.073 0.927 24 H 0.040 0.960 25 H 0.075 0.925 26 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.658 -2.823 -1.800 3.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.523 4.523 8 H 0.076 0.924 9 C 0.073 3.927 10 C 0.003 3.997 11 O -0.237 6.237 12 N -0.260 5.260 13 C -0.176 4.176 14 C -0.171 4.171 15 C -0.155 4.155 16 H 0.070 0.930 17 H 0.080 0.920 18 H 0.034 0.966 19 H 0.139 0.861 20 H 0.161 0.839 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.091 0.909 24 H 0.059 0.941 25 H 0.094 0.906 26 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.433 -3.388 -1.527 3.742 hybrid contribution 0.547 1.956 -0.388 2.068 sum 0.980 -1.432 -1.914 2.584 Atomic orbital electron populations 1.69931 1.05753 1.26498 1.50520 1.24936 0.94844 0.98867 0.95000 0.86691 0.79649 0.83213 0.78631 1.20398 1.21400 1.20260 1.20686 0.92888 0.89216 1.49538 0.92435 1.19246 0.92781 0.92814 0.87853 1.22722 0.91902 0.97629 0.87398 1.90742 1.28366 1.96777 1.07780 1.64338 1.16314 1.50573 0.94813 1.23016 0.99555 0.98632 0.96372 1.22689 0.99682 0.98547 0.96172 1.22757 0.94685 0.98949 0.99126 0.93046 0.92044 0.96565 0.86102 0.83854 0.92579 0.93009 0.90869 0.94148 0.90594 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.75 11.07 55.43 0.61 -24.14 15 2 C 0.06 1.77 5.22 -17.82 -0.09 1.68 15 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 15 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 15 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 7 C -0.49 -13.33 7.86 -34.44 -0.27 -13.60 15 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 15 9 C 0.07 1.88 0.53 -154.85 -0.08 1.80 15 10 C 0.08 2.00 5.54 37.16 0.21 2.21 15 11 O -0.22 -5.31 11.72 -13.92 -0.16 -5.47 15 12 N -0.70 -13.09 10.79 60.35 0.65 -12.44 15 13 C -0.14 -3.09 7.19 -25.83 -0.19 -3.28 15 14 C -0.13 -2.82 7.81 -25.83 -0.20 -3.02 15 15 C -0.12 -2.75 6.82 -25.92 -0.18 -2.93 15 16 H 0.26 6.98 8.31 -40.82 -0.34 6.64 15 17 H 0.06 1.63 6.96 -51.93 -0.36 1.27 15 18 H 0.02 0.38 8.13 -51.93 -0.42 -0.04 15 19 H 0.33 5.71 9.18 -39.29 -0.36 5.35 15 20 H 0.35 5.46 9.25 -39.29 -0.36 5.10 15 21 H 0.06 1.18 8.10 -51.93 -0.42 0.76 15 22 H 0.05 1.16 8.09 -51.93 -0.42 0.74 15 23 H 0.07 1.57 8.14 -51.93 -0.42 1.15 15 24 H 0.04 0.74 8.14 -51.93 -0.42 0.32 15 25 H 0.08 1.95 7.25 -51.93 -0.38 1.58 15 26 H 0.05 1.01 8.09 -51.93 -0.42 0.59 15 LS Contribution 222.85 15.07 3.36 3.36 Total: -1.00 -28.90 222.85 -4.90 -33.80 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -3.53 Total: 5.71 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -0.80 Total: -17.14 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 1.26 Total: -36.58 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.16 Total: -5.47 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -28.90 -4.90 -33.80 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260918636.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.045 kcal (2) G-P(sol) polarization free energy of solvation -28.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds