Wall clock time and date at job start Mon Mar 30 2020 02:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 119.99993 * 2 1 4 4 H 1.48497 * 109.47364 * 240.00031 * 3 2 1 5 5 H 1.48503 * 109.47085 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47409 * 119.99956 * 3 2 1 7 7 C 1.37884 * 120.00193 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99755 * 185.32118 * 7 2 1 9 9 C 1.50697 * 119.99847 * 5.32551 * 7 2 1 10 10 C 1.52997 * 112.85217 * 65.13157 * 9 7 2 11 11 O 1.42907 * 109.47051 * 62.65239 * 10 9 7 12 12 N 1.46293 * 114.00057 * 180.02562 * 11 10 9 13 13 C 1.53782 * 113.61515 * 196.32999 * 9 7 2 14 14 C 1.53954 * 87.01914 * 89.22636 * 13 9 7 15 15 C 1.53781 * 87.11152 * 25.36449 * 14 13 9 16 16 H 0.96994 * 120.00582 * 359.97438 * 1 2 3 17 17 H 1.08999 * 109.47258 * 302.65162 * 10 9 7 18 18 H 1.09001 * 109.47373 * 182.64757 * 10 9 7 19 19 H 1.00898 * 111.00214 * 56.04634 * 12 11 10 20 20 H 1.00899 * 110.99855 * 180.02562 * 12 11 10 21 21 H 1.08997 * 113.61871 * 203.74724 * 13 9 7 22 22 H 1.09003 * 113.61041 * 334.65478 * 13 9 7 23 23 H 1.09001 * 113.53891 * 270.81303 * 14 13 9 24 24 H 1.09005 * 113.66975 * 139.93371 * 14 13 9 25 25 H 1.09002 * 113.61535 * 220.08963 * 15 14 13 26 26 H 1.09005 * 113.61159 * 89.18369 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0811 -1.1960 0.0873 9 6 1.2560 -2.4964 -0.1200 10 6 0.5513 -2.6540 -1.4688 11 8 1.5241 -2.6704 -2.5155 12 7 0.9546 -2.8172 -3.8550 13 6 2.0866 -3.7245 0.2882 14 6 1.5674 -3.4995 1.7200 15 6 0.3524 -2.8015 1.0864 16 1 -0.4851 0.8399 0.0004 17 1 -0.1325 -1.8189 -1.6213 18 1 -0.0090 -3.5889 -1.4790 19 1 0.2767 -2.0934 -4.0411 20 1 1.6791 -2.8237 -4.5572 21 1 1.7398 -4.6552 -0.1607 22 1 3.1618 -3.5783 0.1848 23 1 2.1951 -2.8324 2.3109 24 1 1.3168 -4.4215 2.2446 25 1 0.0296 -1.9113 1.6263 26 1 -0.4695 -3.4794 0.8560 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260918636.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:25 Heat of formation + Delta-G solvation = -6.055018 kcal Electronic energy + Delta-G solvation = -10369.719408 eV Core-core repulsion = 8450.038112 eV Total energy + Delta-G solvation = -1919.681296 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.82905 -36.93235 -34.24508 -31.02358 -28.57546 -26.77119 -26.04034 -22.99565 -20.23661 -17.88331 -17.23322 -16.93196 -16.62557 -15.66371 -15.63921 -14.66182 -14.17598 -13.59423 -13.25338 -12.86717 -12.72426 -12.53134 -11.90222 -11.74744 -11.50922 -10.91329 -10.81103 -10.42590 -10.35163 -9.72519 -8.07632 -6.16123 1.40509 1.41457 1.48518 2.13160 2.43925 3.19849 4.20381 4.26625 4.34065 4.45764 4.75373 4.80832 4.99340 5.06177 5.09791 5.28562 5.38042 5.55098 5.69310 5.85754 6.04176 6.13918 6.39682 6.52883 6.86664 7.48732 8.97763 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.034842 B = 0.022586 C = 0.016361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.427892 B = 1239.395351 C = 1710.988603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.944 3.056 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.501 4.501 8 H 0.045 0.955 9 C 0.051 3.949 10 C 0.096 3.904 11 O -0.252 6.252 12 N -0.685 5.685 13 C -0.131 4.131 14 C -0.119 4.119 15 C -0.117 4.117 16 H 0.259 0.741 17 H 0.035 0.965 18 H 0.024 0.976 19 H 0.340 0.660 20 H 0.368 0.632 21 H 0.071 0.929 22 H 0.046 0.954 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.966 -3.309 -1.945 3.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.175 4.175 3 Si 0.771 3.229 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.049 3.951 10 C 0.018 3.982 11 O -0.267 6.267 12 N -0.251 5.251 13 C -0.168 4.168 14 C -0.156 4.156 15 C -0.155 4.155 16 H 0.068 0.932 17 H 0.053 0.947 18 H 0.042 0.958 19 H 0.150 0.850 20 H 0.182 0.818 21 H 0.090 0.910 22 H 0.064 0.936 23 H 0.083 0.917 24 H 0.093 0.907 25 H 0.065 0.935 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.756 -3.877 -1.670 4.289 hybrid contribution 0.438 2.083 -0.442 2.174 sum 1.194 -1.794 -2.112 3.017 Atomic orbital electron populations 1.70032 1.06651 1.26957 1.50984 1.25543 0.95597 1.01518 0.94875 0.85832 0.78579 0.79982 0.78513 1.20514 1.20928 1.19756 1.20890 0.92501 0.90813 1.49707 0.93680 1.19431 0.93891 0.93103 0.88691 1.22451 0.91372 0.96773 0.87632 1.90672 1.29388 1.96761 1.09842 1.64296 1.16995 1.51033 0.92807 1.22951 0.98848 0.97994 0.97022 1.22589 0.97794 0.99474 0.95732 1.22700 0.95780 0.98391 0.98619 0.93166 0.94680 0.95765 0.85003 0.81805 0.91021 0.93563 0.91657 0.90719 0.93461 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.79 11.07 21.45 0.24 -50.55 15 2 C 0.02 1.31 5.22 84.66 0.44 1.76 15 3 Si 0.94 43.71 29.54 68.60 2.03 45.74 15 4 H -0.28 -12.89 7.11 99.48 0.71 -12.18 15 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 15 6 H -0.27 -12.30 7.11 99.48 0.71 -11.60 15 7 C -0.50 -27.53 7.86 25.60 0.20 -27.33 15 8 H 0.04 2.52 7.81 -2.91 -0.02 2.49 15 9 C 0.05 2.51 0.53 -52.40 -0.03 2.49 15 10 C 0.10 4.65 5.54 71.98 0.40 5.05 15 11 O -0.25 -11.86 11.72 -50.14 -0.59 -12.45 15 12 N -0.68 -24.50 10.79 37.02 0.40 -24.10 15 13 C -0.13 -5.61 7.19 31.18 0.22 -5.39 15 14 C -0.12 -4.77 7.81 31.18 0.24 -4.52 15 15 C -0.12 -5.39 6.82 31.12 0.21 -5.18 15 16 H 0.26 13.96 8.31 -92.71 -0.77 13.19 15 17 H 0.03 1.86 6.96 -2.39 -0.02 1.85 15 18 H 0.02 1.11 8.13 -2.39 -0.02 1.09 15 19 H 0.34 11.25 9.18 -89.70 -0.82 10.43 15 20 H 0.37 10.71 9.25 -89.69 -0.83 9.88 15 21 H 0.07 2.83 8.10 -2.39 -0.02 2.81 15 22 H 0.05 2.00 8.09 -2.39 -0.02 1.98 15 23 H 0.06 2.71 8.14 -2.39 -0.02 2.69 15 24 H 0.07 2.49 8.14 -2.38 -0.02 2.47 15 25 H 0.05 2.43 7.25 -2.39 -0.02 2.41 15 26 H 0.06 2.52 8.09 -2.38 -0.02 2.50 15 Total: -1.00 -59.88 222.85 3.29 -56.59 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -0.48 Total: 17.91 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: 1.69 Total: -33.13 kcal Atomic # 7 Polarization: -75.29 SS G_CDS: 0.64 Total: -74.65 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -0.59 Total: -12.45 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -59.88 3.29 -56.59 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260918636.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.534 kcal (2) G-P(sol) polarization free energy of solvation -59.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds