Wall clock time and date at job start Mon Mar 30 2020 01:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31234 * 1 3 3 Si 1.86800 * 119.99843 * 2 1 4 4 H 1.48500 * 109.47242 * 85.01664 * 3 2 1 5 5 H 1.48506 * 109.46959 * 205.01369 * 3 2 1 6 6 H 1.48494 * 109.47331 * 325.01334 * 3 2 1 7 7 C 1.39486 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00211 * 186.41591 * 7 2 1 9 9 C 1.40847 * 119.99913 * 6.42064 * 7 2 1 10 10 N 1.36375 * 126.70310 * 6.18632 * 9 7 2 11 11 C 1.30589 * 108.63821 * 180.02562 * 10 9 7 12 12 O 1.35238 * 125.03996 * 180.02562 * 11 10 9 13 13 O 1.34383 * 109.92335 * 0.02562 * 11 10 9 14 14 C 1.34744 * 108.40486 * 359.72312 * 13 11 10 15 15 O 1.35173 * 126.77704 * 180.28210 * 14 13 11 16 16 H 0.97000 * 119.99510 * 359.97438 * 1 2 3 17 17 H 0.96700 * 113.99705 * 90.00153 * 12 11 10 18 18 H 0.96700 * 113.99975 * 270.16731 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3123 0.0000 0.0000 3 14 2.2463 1.6178 0.0000 4 1 2.3885 2.1073 1.3948 5 1 3.5926 1.4121 -0.5920 6 1 1.5005 2.6199 -0.8027 7 6 2.0098 -1.2080 0.0005 8 1 3.0846 -1.2109 0.1050 9 6 1.3122 -2.4240 -0.1353 10 7 -0.0185 -2.5760 -0.3921 11 6 -0.2902 -3.8522 -0.4453 12 8 -1.5142 -4.3762 -0.6822 13 8 0.8268 -4.5675 -0.2298 14 6 1.8497 -3.7117 -0.0379 15 8 3.1400 -4.0339 0.2039 16 1 -0.4849 0.8401 0.0004 17 1 -1.7025 -4.5282 -1.6185 18 1 3.3521 -4.1304 1.1423 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260933709.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:04 Heat of formation + Delta-G solvation = -64.483657 kcal Electronic energy + Delta-G solvation = -9681.468954 eV Core-core repulsion = 7487.587813 eV Total energy + Delta-G solvation = -2193.881141 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 171.036 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.16196 -36.91679 -35.80599 -34.24294 -32.19464 -28.01725 -24.89638 -21.20881 -20.73781 -18.16185 -17.57115 -16.99729 -15.53231 -14.89842 -14.61894 -13.72266 -13.10386 -12.69632 -11.57969 -11.48442 -11.30018 -10.66473 -10.36648 -10.10904 -9.85234 -8.92477 -8.70995 -7.24688 -6.62306 -4.41428 2.57298 3.04599 3.11158 3.16965 3.28816 3.97225 4.11537 4.92124 5.31041 6.16080 6.70798 6.87489 7.19662 7.44882 8.02139 8.27144 8.49544 8.79387 8.83233 9.44116 10.31349 Molecular weight = 171.04amu Principal moments of inertia in cm(-1) A = 0.060726 B = 0.017640 C = 0.013818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.974700 B = 1586.939905 C = 2025.872505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.071 3.929 3 Si 0.917 3.083 4 H -0.270 1.270 5 H -0.260 1.260 6 H -0.276 1.276 7 C -0.429 4.429 8 H 0.092 0.908 9 C 0.200 3.800 10 N -0.429 5.429 11 C 0.323 3.677 12 O -0.423 6.423 13 O -0.259 6.259 14 C -0.102 4.102 15 O -0.412 6.412 16 H 0.277 0.723 17 H 0.393 0.607 18 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.679 -1.133 -0.554 1.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.151 4.151 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.184 1.184 6 H -0.201 1.201 7 C -0.460 4.460 8 H 0.110 0.890 9 C 0.083 3.917 10 N -0.177 5.177 11 C 0.078 3.922 12 O -0.228 6.228 13 O -0.155 6.155 14 C -0.196 4.196 15 O -0.217 6.217 16 H 0.087 0.913 17 H 0.249 0.751 18 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -0.002 -0.630 -0.655 0.909 hybrid contribution 0.738 -0.158 0.184 0.777 sum 0.736 -0.788 -0.471 1.177 Atomic orbital electron populations 1.70159 1.07041 1.28505 1.32006 1.25979 0.94977 1.01234 0.92946 0.86163 0.80419 0.80367 0.78969 1.19529 1.18414 1.20076 1.18574 0.94743 0.87928 1.44786 0.89013 1.19097 0.86127 0.91423 0.95089 1.71806 1.15883 1.10858 1.19160 1.22302 0.80236 0.84542 1.05155 1.84879 1.22507 1.84143 1.31301 1.83850 1.17632 1.40821 1.73168 1.19986 0.81299 0.85321 1.32989 1.85094 1.16773 1.91701 1.28141 0.91252 0.75133 0.80502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -20.62 12.02 55.53 0.67 -19.95 13 2 C 0.07 1.84 5.48 -17.34 -0.10 1.74 13 3 Si 0.92 18.97 29.56 -169.99 -5.03 13.94 13 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 13 5 H -0.26 -5.30 7.11 56.52 0.40 -4.90 13 6 H -0.28 -5.57 7.11 56.52 0.40 -5.17 13 7 C -0.43 -11.89 9.35 -38.13 -0.36 -12.24 13 8 H 0.09 2.40 7.85 -52.49 -0.41 1.99 13 9 C 0.20 5.77 6.69 -84.25 -0.56 5.21 13 10 N -0.43 -12.20 9.67 -12.51 -0.12 -12.32 13 11 C 0.32 8.16 9.56 52.23 0.50 8.66 13 12 O -0.42 -8.51 13.63 -40.68 -0.55 -9.06 13 13 O -0.26 -6.81 10.75 -27.55 -0.30 -7.10 13 14 C -0.10 -2.77 8.73 31.35 0.27 -2.50 13 15 O -0.41 -9.76 13.61 -40.26 -0.55 -10.31 13 16 H 0.28 6.84 8.30 -40.82 -0.34 6.50 13 17 H 0.39 5.38 9.06 45.56 0.41 5.79 13 18 H 0.34 6.35 9.06 45.56 0.41 6.76 13 LS Contribution 184.62 15.07 2.78 2.78 Total: -1.00 -33.16 184.62 -2.06 -35.22 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: 1.28 Total: 5.93 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -0.24 Total: 0.87 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.55 Total: -32.27 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -1.40 Total: -26.47 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 2.78 Total: 2.78 kcal Total: -33.16 -2.06 -35.22 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260933709.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.268 kcal (2) G-P(sol) polarization free energy of solvation -33.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds