Wall clock time and date at job start Mon Mar 30 2020 02:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86790 * 119.99749 * 2 1 4 4 H 1.48503 * 109.47539 * 269.99982 * 3 2 1 5 5 H 1.48500 * 109.47547 * 30.00107 * 3 2 1 6 6 H 1.48509 * 109.47154 * 149.99933 * 3 2 1 7 7 C 1.37879 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99958 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99614 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.47358 * 59.99668 * 9 7 2 11 11 O 1.42903 * 109.47131 * 299.99309 * 9 7 2 12 12 C 1.53003 * 109.47222 * 180.02562 * 9 7 2 13 13 N 1.46900 * 109.47407 * 184.99595 * 12 9 7 14 14 C 1.47485 * 110.99855 * 74.02558 * 13 12 9 15 15 C 1.53512 * 87.93013 * 138.70094 * 14 13 12 16 16 C 1.47473 * 110.99932 * 169.99733 * 13 12 9 17 17 H 0.96999 * 120.00287 * 0.02562 * 1 2 3 18 18 H 0.96700 * 114.00311 * 300.00591 * 11 9 7 19 19 H 1.09005 * 109.46682 * 304.99605 * 12 9 7 20 20 H 1.08999 * 109.47221 * 64.99771 * 12 9 7 21 21 H 1.08999 * 113.47978 * 253.47620 * 14 13 12 22 22 H 1.09002 * 113.47302 * 23.93429 * 14 13 12 23 23 H 1.08999 * 114.17190 * 220.32164 * 15 14 13 24 24 H 1.09004 * 114.16416 * 87.62631 * 15 14 13 25 25 H 1.09005 * 113.48173 * 336.06127 * 16 13 12 26 26 H 1.08995 * 113.47720 * 106.53537 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8745 -0.6807 0.8905 11 8 3.9883 -0.5197 -1.1662 12 6 4.0216 -2.6365 -0.0014 13 7 5.4856 -2.6384 0.1198 14 6 5.9027 -2.3002 1.4935 15 6 6.9704 -3.3973 1.3798 16 6 5.9942 -4.0015 0.3607 17 1 -0.4850 0.8400 -0.0004 18 1 3.7033 -0.9227 -1.9977 19 1 3.5867 -3.1765 0.8398 20 1 3.7336 -3.1229 -0.9334 21 1 6.3188 -1.2971 1.5864 22 1 5.1404 -2.5121 2.2432 23 1 7.0968 -3.9925 2.2842 24 1 7.9130 -3.0597 0.9490 25 1 5.2565 -4.6676 0.8083 26 1 6.4881 -4.4403 -0.5062 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260938048.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:49 Heat of formation + Delta-G solvation = -16.128366 kcal Electronic energy + Delta-G solvation = -10164.922695 eV Core-core repulsion = 8244.804586 eV Total energy + Delta-G solvation = -1920.118109 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.55794 -35.88288 -32.24707 -30.53618 -27.24687 -25.56091 -23.71100 -20.51071 -19.52260 -17.37472 -15.64028 -15.15188 -14.81983 -14.55366 -14.02822 -13.10318 -12.70300 -12.24685 -11.96321 -11.49566 -11.25037 -10.84254 -10.60959 -10.38968 -10.31498 -9.74889 -9.15270 -8.65691 -8.43720 -8.31677 -6.13835 -4.25959 3.45940 3.49552 3.63653 4.45107 4.51073 4.71488 5.13530 5.17947 5.56502 5.62116 5.75884 5.82847 5.93608 5.96116 6.08443 6.18736 6.39102 6.60240 6.77430 7.38201 7.41290 7.67990 8.28086 8.81943 9.08330 9.50138 10.96543 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.077620 B = 0.013573 C = 0.012775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.643000 B = 2062.391137 C = 2191.302876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.081 3.919 3 Si 0.916 3.084 4 H -0.278 1.278 5 H -0.306 1.306 6 H -0.268 1.268 7 C -0.565 4.565 8 H 0.072 0.928 9 C 0.200 3.800 10 H 0.057 0.943 11 O -0.578 6.578 12 C 0.004 3.996 13 N -0.465 5.465 14 C -0.002 4.002 15 C -0.148 4.148 16 C -0.008 4.008 17 H 0.265 0.735 18 H 0.360 0.640 19 H 0.041 0.959 20 H 0.070 0.930 21 H 0.080 0.920 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.364 -5.091 1.867 11.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.123 4.123 3 Si 0.746 3.254 4 H -0.203 1.203 5 H -0.234 1.234 6 H -0.193 1.193 7 C -0.603 4.603 8 H 0.090 0.910 9 C 0.143 3.857 10 H 0.075 0.925 11 O -0.383 6.383 12 C -0.124 4.124 13 N -0.187 5.187 14 C -0.131 4.131 15 C -0.186 4.186 16 C -0.137 4.137 17 H 0.075 0.925 18 H 0.206 0.794 19 H 0.059 0.941 20 H 0.088 0.912 21 H 0.098 0.902 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.106 0.894 25 H 0.081 0.919 26 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.675 -4.209 1.729 11.604 hybrid contribution -0.521 -0.079 0.275 0.594 sum 10.154 -4.288 2.003 11.203 Atomic orbital electron populations 1.69964 1.06659 1.27517 1.48943 1.25026 0.94702 1.00055 0.92518 0.86198 0.79100 0.81450 0.78636 1.20342 1.23400 1.19323 1.21564 0.89927 0.94879 1.53907 0.90951 1.19807 0.93107 0.86959 0.85871 0.92487 1.86366 1.77620 1.57914 1.16417 1.23354 0.86842 1.01305 1.00939 1.69003 1.13592 1.12419 1.23709 1.23711 0.97262 1.00007 0.92124 1.23107 0.98054 0.98281 0.99125 1.23757 0.97698 0.93466 0.98806 0.92505 0.79429 0.94057 0.91162 0.90192 0.91471 0.91292 0.89373 0.91909 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.54 13.96 55.43 0.77 -26.76 15 2 C 0.08 2.39 5.47 -17.82 -0.10 2.30 15 3 Si 0.92 23.85 26.18 -169.99 -4.45 19.40 15 4 H -0.28 -7.22 7.11 56.52 0.40 -6.82 15 5 H -0.31 -7.83 7.11 56.52 0.40 -7.43 15 6 H -0.27 -6.98 6.54 56.52 0.37 -6.61 15 7 C -0.56 -16.05 9.34 -34.44 -0.32 -16.37 15 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 15 9 C 0.20 4.90 2.38 -27.88 -0.07 4.84 15 10 H 0.06 1.47 6.61 -51.93 -0.34 1.12 15 11 O -0.58 -13.99 10.98 -35.23 -0.39 -14.38 15 12 C 0.00 0.08 4.40 -3.82 -0.02 0.07 15 13 N -0.47 -8.52 6.36 -244.66 -1.56 -10.08 15 14 C 0.00 -0.03 6.93 -7.54 -0.05 -0.08 15 15 C -0.15 -1.90 8.47 -26.20 -0.22 -2.13 15 16 C -0.01 -0.12 7.70 -7.55 -0.06 -0.17 15 17 H 0.27 7.67 8.31 -40.82 -0.34 7.33 15 18 H 0.36 7.73 9.04 45.56 0.41 8.14 15 19 H 0.04 0.84 7.56 -51.93 -0.39 0.45 15 20 H 0.07 1.43 8.14 -51.93 -0.42 1.00 15 21 H 0.08 1.32 8.14 -51.93 -0.42 0.90 15 22 H 0.07 1.08 7.70 -51.93 -0.40 0.68 15 23 H 0.07 0.75 8.14 -51.93 -0.42 0.32 15 24 H 0.09 1.07 8.14 -51.93 -0.42 0.65 15 25 H 0.06 0.87 7.77 -51.93 -0.40 0.47 15 26 H 0.08 1.03 8.14 -51.93 -0.42 0.61 15 LS Contribution 218.62 15.07 3.29 3.29 Total: -1.00 -31.49 218.62 -5.99 -37.47 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -2.83 Total: 2.60 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -0.83 Total: -11.55 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: -0.78 Total: -36.84 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.39 Total: -14.38 kcal Atomic # 14 Polarization: 23.85 SS G_CDS: -4.45 Total: 19.40 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -31.49 -5.99 -37.47 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260938048.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.344 kcal (2) G-P(sol) polarization free energy of solvation -31.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds