Wall clock time and date at job start Mon Mar 30 2020 02:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86790 * 119.99749 * 2 1 4 4 H 1.48503 * 109.47539 * 269.99982 * 3 2 1 5 5 H 1.48500 * 109.47547 * 30.00107 * 3 2 1 6 6 H 1.48509 * 109.47154 * 149.99933 * 3 2 1 7 7 C 1.37879 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99958 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99614 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.47358 * 59.99668 * 9 7 2 11 11 O 1.42903 * 109.47131 * 299.99309 * 9 7 2 12 12 C 1.53003 * 109.47222 * 180.02562 * 9 7 2 13 13 N 1.46900 * 109.47407 * 184.99595 * 12 9 7 14 14 C 1.47485 * 110.99855 * 74.02558 * 13 12 9 15 15 C 1.53512 * 87.93013 * 138.70094 * 14 13 12 16 16 C 1.47473 * 110.99932 * 169.99733 * 13 12 9 17 17 H 0.96999 * 120.00287 * 0.02562 * 1 2 3 18 18 H 0.96700 * 114.00311 * 300.00591 * 11 9 7 19 19 H 1.09005 * 109.46682 * 304.99605 * 12 9 7 20 20 H 1.08999 * 109.47221 * 64.99771 * 12 9 7 21 21 H 1.08999 * 113.47978 * 253.47620 * 14 13 12 22 22 H 1.09002 * 113.47302 * 23.93429 * 14 13 12 23 23 H 1.08999 * 114.17190 * 220.32164 * 15 14 13 24 24 H 1.09004 * 114.16416 * 87.62631 * 15 14 13 25 25 H 1.09005 * 113.48173 * 336.06127 * 16 13 12 26 26 H 1.08995 * 113.47720 * 106.53537 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8745 -0.6807 0.8905 11 8 3.9883 -0.5197 -1.1662 12 6 4.0216 -2.6365 -0.0014 13 7 5.4856 -2.6384 0.1198 14 6 5.9027 -2.3002 1.4935 15 6 6.9704 -3.3973 1.3798 16 6 5.9942 -4.0015 0.3607 17 1 -0.4850 0.8400 -0.0004 18 1 3.7033 -0.9227 -1.9977 19 1 3.5867 -3.1765 0.8398 20 1 3.7336 -3.1229 -0.9334 21 1 6.3188 -1.2971 1.5864 22 1 5.1404 -2.5121 2.2432 23 1 7.0968 -3.9925 2.2842 24 1 7.9130 -3.0597 0.9490 25 1 5.2565 -4.6676 0.8083 26 1 6.4881 -4.4403 -0.5062 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260938048.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:49 Heat of formation + Delta-G solvation = -42.647801 kcal Electronic energy + Delta-G solvation = -10166.072664 eV Core-core repulsion = 8244.804586 eV Total energy + Delta-G solvation = -1921.268078 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.87114 -37.78523 -34.48360 -32.16296 -29.08810 -26.79009 -25.44498 -22.35331 -20.74072 -19.45705 -17.05361 -16.95472 -16.46332 -16.34938 -15.74140 -14.96646 -14.53821 -13.75252 -13.49123 -13.16133 -13.02193 -12.76750 -12.17179 -11.83428 -11.79607 -11.53438 -11.14367 -10.91784 -10.35293 -9.73872 -8.41301 -6.56665 1.37246 1.40627 1.55876 2.34682 2.93284 3.16275 3.58165 3.95919 3.99051 4.15458 4.45480 4.47897 4.55163 4.72971 4.83290 4.91242 4.97690 5.25123 5.31245 5.42121 5.55281 6.03064 6.15522 6.55939 7.14351 7.28624 8.72856 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.077620 B = 0.013573 C = 0.012775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.643000 B = 2062.391137 C = 2191.302876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.032 3.968 3 Si 0.976 3.024 4 H -0.274 1.274 5 H -0.299 1.299 6 H -0.267 1.267 7 C -0.568 4.568 8 H 0.042 0.958 9 C 0.207 3.793 10 H 0.047 0.953 11 O -0.582 6.582 12 C 0.017 3.983 13 N -0.487 5.487 14 C -0.015 4.015 15 C -0.124 4.124 16 C -0.009 4.009 17 H 0.270 0.730 18 H 0.372 0.628 19 H 0.038 0.962 20 H 0.069 0.931 21 H 0.072 0.928 22 H 0.064 0.936 23 H 0.096 0.904 24 H 0.099 0.901 25 H 0.069 0.931 26 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.247 -5.272 2.024 13.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.169 4.169 3 Si 0.804 3.196 4 H -0.200 1.200 5 H -0.226 1.226 6 H -0.192 1.192 7 C -0.606 4.606 8 H 0.060 0.940 9 C 0.149 3.851 10 H 0.065 0.935 11 O -0.389 6.389 12 C -0.111 4.111 13 N -0.209 5.209 14 C -0.144 4.144 15 C -0.162 4.162 16 C -0.137 4.137 17 H 0.079 0.921 18 H 0.220 0.780 19 H 0.056 0.944 20 H 0.088 0.912 21 H 0.091 0.909 22 H 0.082 0.918 23 H 0.114 0.886 24 H 0.117 0.883 25 H 0.087 0.913 26 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.568 -4.405 1.880 13.450 hybrid contribution -1.112 -0.091 0.216 1.137 sum 11.456 -4.496 2.096 12.483 Atomic orbital electron populations 1.70062 1.08132 1.28573 1.50630 1.25805 0.95327 1.03324 0.92415 0.85255 0.77810 0.77848 0.78694 1.19959 1.22638 1.19193 1.21873 0.92219 0.93594 1.52954 0.94015 1.19591 0.90486 0.89390 0.85629 0.93535 1.86299 1.77379 1.58311 1.16915 1.23045 0.88940 0.98342 1.00822 1.68975 1.11228 1.15450 1.25276 1.23840 0.98542 1.01007 0.90993 1.23050 0.97130 0.96325 0.99657 1.23862 0.98061 0.91749 1.00055 0.92124 0.78049 0.94403 0.91246 0.90931 0.91796 0.88586 0.88263 0.91312 0.89087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.26 13.96 21.45 0.30 -57.96 15 2 C 0.03 1.87 5.47 84.65 0.46 2.33 15 3 Si 0.98 48.92 26.18 68.60 1.80 50.71 15 4 H -0.27 -13.49 7.11 99.48 0.71 -12.79 15 5 H -0.30 -14.50 7.11 99.48 0.71 -13.80 15 6 H -0.27 -13.24 6.54 99.48 0.65 -12.58 15 7 C -0.57 -32.60 9.34 25.60 0.24 -32.36 15 8 H 0.04 2.59 7.99 -2.92 -0.02 2.57 15 9 C 0.21 10.01 2.38 29.85 0.07 10.08 15 10 H 0.05 2.36 6.61 -2.39 -0.02 2.35 15 11 O -0.58 -27.36 10.98 -148.98 -1.64 -28.99 15 12 C 0.02 0.70 4.40 86.30 0.38 1.08 15 13 N -0.49 -16.88 6.36 -927.98 -5.90 -22.79 15 14 C -0.01 -0.45 6.93 83.57 0.58 0.13 15 15 C -0.12 -2.75 8.47 30.94 0.26 -2.48 15 16 C -0.01 -0.22 7.70 83.58 0.64 0.42 15 17 H 0.27 15.70 8.31 -92.71 -0.77 14.93 15 18 H 0.37 15.48 9.04 -74.06 -0.67 14.81 15 19 H 0.04 1.53 7.56 -2.38 -0.02 1.51 15 20 H 0.07 2.77 8.14 -2.39 -0.02 2.75 15 21 H 0.07 2.28 8.14 -2.39 -0.02 2.26 15 22 H 0.06 1.97 7.70 -2.39 -0.02 1.95 15 23 H 0.10 1.66 8.14 -2.39 -0.02 1.64 15 24 H 0.10 2.01 8.14 -2.39 -0.02 1.99 15 25 H 0.07 1.72 7.77 -2.38 -0.02 1.70 15 26 H 0.09 2.12 8.14 -2.39 -0.02 2.10 15 Total: -1.00 -66.05 218.62 -2.37 -68.42 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.43 Total: 11.40 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: 2.64 Total: -20.79 kcal Atomic # 7 Polarization: -75.14 SS G_CDS: -5.60 Total: -80.75 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -1.64 Total: -28.99 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 1.80 Total: 50.71 kcal Total: -66.05 -2.37 -68.42 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260938048.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.772 kcal (2) G-P(sol) polarization free energy of solvation -66.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds