Wall clock time and date at job start Mon Mar 30 2020 01:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99932 * 2 1 4 4 H 1.48497 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47425 * 300.00388 * 3 2 1 6 6 H 1.48503 * 109.47124 * 60.00527 * 3 2 1 7 7 C 1.37871 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99667 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00452 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47343 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.35291 * 304.31110 * 10 9 7 12 12 C 1.53997 * 110.30935 * 66.45245 * 10 9 7 13 13 N 1.47899 * 107.05889 * 117.69154 * 12 10 9 14 14 C 1.48538 * 105.82096 * 25.32759 * 13 12 10 15 15 C 1.54593 * 110.30979 * 182.16721 * 10 9 7 16 16 H 1.09007 * 110.72450 * 337.48700 * 15 10 9 17 17 N 1.46902 * 110.72385 * 100.76529 * 15 10 9 18 18 H 0.97000 * 119.99913 * 359.97438 * 1 2 3 19 19 H 1.08994 * 109.47245 * 59.99489 * 9 7 2 20 20 H 1.09002 * 109.46427 * 299.99847 * 9 7 2 21 21 H 1.09004 * 109.91456 * 237.04250 * 12 10 9 22 22 H 1.08998 * 109.91596 * 358.33383 * 12 10 9 23 23 H 1.00894 * 111.00299 * 145.84122 * 13 12 10 24 24 H 1.09007 * 110.66246 * 79.22764 * 14 13 12 25 25 H 1.08993 * 110.66671 * 202.18915 * 14 13 12 26 26 H 1.00903 * 110.99649 * 180.02562 * 17 15 10 27 27 H 1.00899 * 111.00108 * 303.95836 * 17 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9295 -3.5759 -0.8446 12 6 3.0312 -3.6934 1.3234 13 7 2.7114 -4.9756 1.9876 14 6 2.3195 -5.9083 0.9000 15 6 1.4928 -5.0114 -0.0554 16 1 0.4715 -4.8986 0.3087 17 7 1.5026 -5.5570 -1.4193 18 1 -0.4850 0.8400 0.0004 19 1 0.6240 -2.5567 -0.8902 20 1 0.6248 -2.5570 0.8897 21 1 4.1009 -3.6363 1.1217 22 1 2.7251 -2.8607 1.9567 23 1 3.5083 -5.3280 2.4963 24 1 3.2012 -6.3002 0.3929 25 1 1.7094 -6.7219 1.2922 26 1 1.0120 -6.4378 -1.4598 27 1 1.1143 -4.8965 -2.0758 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260938069.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:55 Heat of formation + Delta-G solvation = -11.014249 kcal Electronic energy + Delta-G solvation = -9987.707484 eV Core-core repulsion = 8165.529801 eV Total energy + Delta-G solvation = -1822.177682 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.26965 -33.18981 -32.82498 -30.48368 -26.62398 -25.87148 -22.61286 -20.51703 -18.98978 -16.37331 -15.89727 -15.11563 -14.79739 -14.28311 -13.19730 -12.91382 -12.51793 -12.15022 -11.67073 -11.19526 -11.10793 -10.87140 -10.41226 -10.22411 -9.88022 -9.22144 -8.96879 -8.37530 -8.31674 -8.04248 -5.98930 -4.00926 3.31845 3.39437 3.43506 4.46724 4.62069 5.11137 5.34848 5.39108 5.43246 5.81027 5.90822 6.07366 6.29749 6.41305 6.69394 6.81747 7.13810 7.23383 7.56066 7.64189 7.70897 7.83939 7.88699 8.01046 8.43073 9.05665 9.63075 11.12353 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.069056 B = 0.012569 C = 0.011549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.370925 B = 2227.226892 C = 2423.954206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.031 3.969 10 C -0.084 4.084 11 H 0.069 0.931 12 C 0.053 3.947 13 N -0.675 5.675 14 C 0.045 3.955 15 C 0.082 3.918 16 H 0.048 0.952 17 N -0.844 5.844 18 H 0.259 0.741 19 H 0.012 0.988 20 H 0.020 0.980 21 H 0.027 0.973 22 H 0.090 0.910 23 H 0.328 0.672 24 H 0.043 0.957 25 H 0.067 0.933 26 H 0.331 0.669 27 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.550 -8.406 0.352 9.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.006 4.006 10 C -0.104 4.104 11 H 0.087 0.913 12 C -0.076 4.076 13 N -0.303 5.303 14 C -0.085 4.085 15 C -0.030 4.030 16 H 0.066 0.934 17 N -0.373 5.373 18 H 0.069 0.931 19 H 0.031 0.969 20 H 0.038 0.962 21 H 0.046 0.954 22 H 0.109 0.891 23 H 0.142 0.858 24 H 0.061 0.939 25 H 0.085 0.915 26 H 0.142 0.858 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.524 -8.113 0.673 8.871 hybrid contribution 0.249 0.867 -0.405 0.989 sum 3.773 -7.246 0.268 8.174 Atomic orbital electron populations 1.69979 1.06051 1.26435 1.51043 1.25024 0.94822 0.99230 0.95396 0.86559 0.80133 0.83908 0.77543 1.19757 1.21084 1.21030 1.21255 0.93007 0.90904 1.50212 0.92632 1.19173 0.93420 0.90896 0.97084 1.22138 0.98102 0.94075 0.96056 0.91270 1.22726 0.96847 0.92024 0.95991 1.63079 1.39727 1.03985 1.23524 1.22962 0.98557 0.95133 0.91837 1.22402 0.97946 0.94997 0.87614 0.93355 1.58775 1.63419 1.08100 1.07043 0.93102 0.96921 0.96200 0.95412 0.89127 0.85791 0.93869 0.91459 0.85794 0.84063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 13.29 55.43 0.74 -26.29 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 15 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 15 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 15 7 C -0.52 -14.52 8.38 -34.44 -0.29 -14.81 15 8 H 0.06 1.53 7.68 -52.48 -0.40 1.13 15 9 C 0.03 0.82 4.18 -27.88 -0.12 0.70 15 10 C -0.08 -1.80 2.68 -89.26 -0.24 -2.04 15 11 H 0.07 1.53 8.05 -51.93 -0.42 1.11 15 12 C 0.05 1.05 6.80 -2.75 -0.02 1.03 15 13 N -0.67 -11.64 7.51 -110.08 -0.83 -12.46 15 14 C 0.05 0.73 7.23 -1.90 -0.01 0.71 15 15 C 0.08 1.49 3.75 -65.85 -0.25 1.24 15 16 H 0.05 0.95 7.86 -51.92 -0.41 0.54 15 17 N -0.84 -13.18 9.30 -3.09 -0.03 -13.21 15 18 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 19 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 15 20 H 0.02 0.56 8.14 -51.93 -0.42 0.13 15 21 H 0.03 0.51 8.14 -51.93 -0.42 0.09 15 22 H 0.09 2.01 7.34 -51.93 -0.38 1.63 15 23 H 0.33 4.74 8.92 -39.30 -0.35 4.39 15 24 H 0.04 0.68 8.14 -51.93 -0.42 0.25 15 25 H 0.07 0.98 8.14 -51.93 -0.42 0.55 15 26 H 0.33 4.26 9.08 -39.29 -0.36 3.90 15 27 H 0.35 5.47 9.03 -39.29 -0.35 5.12 15 LS Contribution 226.40 15.07 3.41 3.41 Total: -1.00 -30.06 226.40 -6.67 -36.73 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -3.92 Total: 6.71 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -1.02 Total: -11.63 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -0.12 Total: -51.96 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -30.06 -6.67 -36.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260938069.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.717 kcal (2) G-P(sol) polarization free energy of solvation -30.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds