Wall clock time and date at job start Mon Mar 30 2020 01:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99820 * 2 1 4 4 H 1.48501 * 109.47250 * 270.00086 * 3 2 1 5 5 H 1.48505 * 109.47147 * 30.00011 * 3 2 1 6 6 H 1.48500 * 109.47217 * 149.99993 * 3 2 1 7 7 C 1.37876 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99940 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99745 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46910 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.63980 * 303.30804 * 10 9 7 12 12 C 1.54936 * 110.72160 * 66.45443 * 10 9 7 13 13 N 1.48537 * 103.37541 * 155.86699 * 12 10 9 14 14 C 1.48064 * 105.73449 * 321.02325 * 13 12 10 15 15 C 1.53988 * 107.14543 * 25.07892 * 14 13 12 16 16 H 1.08997 * 110.31160 * 117.83271 * 15 14 13 17 17 N 1.46905 * 110.39477 * 239.95846 * 15 14 13 18 18 H 0.97003 * 120.00195 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.46509 * 60.00571 * 9 7 2 20 20 H 1.08993 * 109.47121 * 300.00098 * 9 7 2 21 21 H 1.09002 * 110.66947 * 274.38519 * 12 10 9 22 22 H 1.09001 * 110.66952 * 37.35260 * 12 10 9 23 23 H 1.00895 * 110.99877 * 81.38753 * 13 12 10 24 24 H 1.09006 * 109.75798 * 265.76682 * 14 13 12 25 25 H 1.08998 * 110.16226 * 144.62174 * 14 13 12 26 26 H 1.00897 * 110.99890 * 295.76480 * 17 15 14 27 27 H 1.00903 * 110.99670 * 59.72267 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 1 3.6219 -3.1853 0.8518 12 6 3.6581 -3.3466 -1.3292 13 7 4.6751 -4.4243 -1.4322 14 6 5.9414 -3.8289 -0.9481 15 6 5.5671 -2.6744 -0.0004 16 1 5.9403 -2.8733 1.0041 17 7 6.1085 -1.4042 -0.5022 18 1 -0.4850 0.8401 0.0004 19 1 3.8752 -0.6804 0.8889 20 1 3.8745 -0.6799 -0.8911 21 1 2.6544 -3.7685 -1.2777 22 1 3.7416 -2.6573 -2.1694 23 1 4.4147 -5.2219 -0.8719 24 1 6.5147 -3.4454 -1.7922 25 1 6.5263 -4.5755 -0.4109 26 1 7.1173 -1.4176 -0.5063 27 1 5.7458 -1.1941 -1.4201 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260938070.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:56 Heat of formation + Delta-G solvation = -28.882413 kcal Electronic energy + Delta-G solvation = -10121.313623 eV Core-core repulsion = 8298.361119 eV Total energy + Delta-G solvation = -1822.952504 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.08944 -35.16496 -33.94620 -32.56739 -28.20970 -27.81769 -24.10497 -22.48612 -20.15265 -19.10501 -17.77306 -16.47647 -16.12783 -15.62470 -15.08051 -14.66566 -14.57076 -13.60346 -13.42548 -13.19392 -12.80316 -12.48988 -12.20515 -11.75591 -11.52695 -11.35584 -11.03998 -10.71420 -9.86019 -9.23454 -8.25513 -6.27487 1.37674 1.39944 1.54974 2.40139 3.10687 3.32602 3.75969 3.86130 4.11661 4.16859 4.41146 4.52198 4.72024 4.97328 5.04766 5.08057 5.22178 5.49947 5.65018 5.70943 5.77905 6.30716 6.34420 6.44750 6.70509 6.83742 7.37145 8.91153 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.064566 B = 0.015055 C = 0.012864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.558734 B = 1859.352093 C = 2176.156670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.002 3.998 3 Si 0.950 3.050 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.249 1.249 7 C -0.524 4.524 8 H 0.032 0.968 9 C 0.027 3.973 10 C -0.106 4.106 11 H 0.056 0.944 12 C 0.062 3.938 13 N -0.677 5.677 14 C 0.015 3.985 15 C 0.068 3.932 16 H 0.087 0.913 17 N -0.842 5.842 18 H 0.264 0.736 19 H 0.009 0.991 20 H 0.022 0.978 21 H 0.056 0.944 22 H 0.065 0.935 23 H 0.341 0.659 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.349 0.651 27 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.438 -4.633 -1.367 14.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.194 4.194 3 Si 0.774 3.226 4 H -0.193 1.193 5 H -0.215 1.215 6 H -0.173 1.173 7 C -0.563 4.563 8 H 0.050 0.950 9 C -0.011 4.011 10 C -0.127 4.127 11 H 0.075 0.925 12 C -0.068 4.068 13 N -0.304 5.304 14 C -0.117 4.117 15 C -0.045 4.045 16 H 0.105 0.895 17 N -0.373 5.373 18 H 0.073 0.927 19 H 0.028 0.972 20 H 0.041 0.959 21 H 0.075 0.925 22 H 0.084 0.916 23 H 0.157 0.843 24 H 0.094 0.906 25 H 0.105 0.895 26 H 0.163 0.837 27 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 13.088 -4.160 -1.479 13.813 hybrid contribution -0.191 0.233 0.308 0.431 sum 12.897 -3.927 -1.172 13.532 Atomic orbital electron populations 1.70079 1.08248 1.27898 1.53386 1.25971 0.95514 1.03392 0.94481 0.85651 0.79405 0.78462 0.79068 1.19275 1.21503 1.17272 1.21611 0.92477 0.92815 1.49361 0.94971 1.19091 0.92312 0.93287 0.96458 1.22549 0.94283 0.97971 0.97858 0.92520 1.22875 0.94713 0.92900 0.96286 1.62865 1.03327 1.07955 1.56270 1.23696 0.92930 0.97429 0.97613 1.22674 0.94135 0.88812 0.98870 0.89514 1.58779 1.12731 1.33380 1.32453 0.92745 0.97228 0.95943 0.92486 0.91615 0.84308 0.90597 0.89512 0.83681 0.84507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.99 13.96 21.45 0.30 -60.69 15 2 C 0.00 0.15 5.47 84.65 0.46 0.61 15 3 Si 0.95 45.91 27.47 68.60 1.88 47.80 15 4 H -0.27 -12.38 7.11 99.48 0.71 -11.67 15 5 H -0.29 -13.76 7.11 99.48 0.71 -13.05 15 6 H -0.25 -11.50 6.54 99.48 0.65 -10.85 15 7 C -0.52 -30.43 9.24 25.60 0.24 -30.19 15 8 H 0.03 2.04 7.91 -2.91 -0.02 2.02 15 9 C 0.03 1.26 2.79 29.85 0.08 1.34 15 10 C -0.11 -4.07 2.97 -9.59 -0.03 -4.10 15 11 H 0.06 2.28 8.14 -2.39 -0.02 2.26 15 12 C 0.06 2.26 6.50 86.65 0.56 2.82 15 13 N -0.68 -19.52 7.53 -501.80 -3.78 -23.30 15 14 C 0.02 0.37 7.30 86.41 0.63 1.00 15 15 C 0.07 2.00 4.01 45.79 0.18 2.18 15 16 H 0.09 2.38 8.14 -2.39 -0.02 2.36 15 17 N -0.84 -23.81 7.98 -165.04 -1.32 -25.13 15 18 H 0.26 15.78 8.31 -92.71 -0.77 15.00 15 19 H 0.01 0.46 7.20 -2.39 -0.02 0.45 15 20 H 0.02 1.04 6.24 -2.39 -0.01 1.02 15 21 H 0.06 2.27 8.12 -2.39 -0.02 2.25 15 22 H 0.07 2.54 8.02 -2.39 -0.02 2.52 15 23 H 0.34 8.75 8.92 -89.70 -0.80 7.95 15 24 H 0.08 1.77 7.93 -2.38 -0.02 1.75 15 25 H 0.09 1.70 8.14 -2.39 -0.02 1.68 15 26 H 0.35 7.49 9.08 -89.70 -0.81 6.67 15 27 H 0.34 9.97 8.00 -89.69 -0.72 9.25 15 Total: -1.00 -66.05 220.11 -1.99 -68.04 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -1.21 Total: 19.61 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: 2.13 Total: -26.34 kcal Atomic # 7 Polarization: -104.32 SS G_CDS: -4.80 Total: -109.11 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.88 Total: 47.80 kcal Total: -66.05 -1.99 -68.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260938070.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.159 kcal (2) G-P(sol) polarization free energy of solvation -66.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds