Wall clock time and date at job start Mon Mar 30 2020 01:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99775 * 2 1 4 4 H 1.48500 * 109.47061 * 269.99774 * 3 2 1 5 5 H 1.48501 * 109.47036 * 29.99236 * 3 2 1 6 6 H 1.48491 * 109.47142 * 149.99434 * 3 2 1 7 7 C 1.37875 * 120.00237 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00172 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47414 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.35279 * 55.68822 * 10 9 7 12 12 C 1.53998 * 110.30584 * 293.55029 * 10 9 7 13 13 N 1.47902 * 107.05813 * 242.30789 * 12 10 9 14 14 C 1.48536 * 105.81944 * 334.66802 * 13 12 10 15 15 C 1.54594 * 110.31187 * 177.83542 * 10 9 7 16 16 H 1.09003 * 110.72239 * 22.51427 * 15 10 9 17 17 N 1.46898 * 110.71873 * 259.40825 * 15 10 9 18 18 H 0.96998 * 120.00424 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.46691 * 60.00052 * 9 7 2 20 20 H 1.09002 * 109.47092 * 300.00518 * 9 7 2 21 21 H 1.09002 * 109.91633 * 122.95355 * 12 10 9 22 22 H 1.09006 * 110.08304 * 1.75154 * 12 10 9 23 23 H 1.00901 * 111.00008 * 95.18016 * 13 12 10 24 24 H 1.08997 * 110.67070 * 157.63763 * 14 13 12 25 25 H 1.09002 * 110.66872 * 280.77469 * 14 13 12 26 26 H 1.00902 * 110.99919 * 179.97438 * 17 15 10 27 27 H 1.00899 * 111.00189 * 303.95054 * 17 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5465 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 1 2.9290 -3.5754 0.8464 12 6 3.0324 -3.6938 -1.3215 13 7 2.7132 -4.9763 -1.9854 14 6 2.3205 -5.9086 -0.8977 15 6 1.4930 -5.0114 0.0566 16 1 0.4720 -4.8987 -0.3083 17 7 1.4982 -5.5543 1.4216 18 1 -0.4851 0.8400 -0.0004 19 1 0.6249 -2.5571 -0.8897 20 1 0.6241 -2.5567 0.8903 21 1 4.1019 -3.6366 -1.1190 22 1 2.7299 -2.8614 -1.9570 23 1 1.9641 -4.8620 -2.6517 24 1 1.7082 -6.7208 -1.2895 25 1 3.2019 -6.3002 -0.3898 26 1 1.0077 -6.4351 1.4622 27 1 2.4406 -5.6485 1.7696 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260938071.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:57 Heat of formation + Delta-G solvation = -36.443738 kcal Electronic energy + Delta-G solvation = -10002.995703 eV Core-core repulsion = 8179.715315 eV Total energy + Delta-G solvation = -1823.280388 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.98446 -35.27684 -34.06836 -32.37352 -27.97873 -27.59930 -24.51050 -22.38904 -20.72289 -18.40193 -17.54140 -16.52279 -16.44096 -16.16368 -14.66661 -14.51385 -14.28039 -13.65892 -13.44980 -13.02684 -12.73382 -12.60565 -12.35406 -11.81825 -11.76510 -11.26022 -11.08763 -10.58026 -10.07095 -9.11319 -8.18879 -6.29634 1.39571 1.40822 1.51876 2.40982 3.13772 3.27874 3.78766 3.84802 4.14881 4.16292 4.50736 4.54682 4.66164 4.97342 5.02147 5.17595 5.34333 5.47512 5.69556 5.73294 5.88485 6.25044 6.29553 6.41618 6.69309 6.86957 7.39402 8.92731 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.069918 B = 0.012516 C = 0.011598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.371159 B = 2236.590243 C = 2413.585869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.046 3.954 10 C -0.098 4.098 11 H 0.059 0.941 12 C 0.058 3.942 13 N -0.674 5.674 14 C 0.019 3.981 15 C 0.064 3.936 16 H 0.066 0.934 17 N -0.843 5.843 18 H 0.262 0.738 19 H -0.013 1.013 20 H -0.017 1.017 21 H 0.070 0.930 22 H 0.056 0.944 23 H 0.339 0.661 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.351 0.649 27 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.675 -9.584 -1.245 10.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.571 4.571 8 H 0.078 0.922 9 C 0.009 3.991 10 C -0.119 4.119 11 H 0.078 0.922 12 C -0.072 4.072 13 N -0.301 5.301 14 C -0.113 4.113 15 C -0.049 4.049 16 H 0.084 0.916 17 N -0.374 5.374 18 H 0.071 0.929 19 H 0.005 0.995 20 H 0.001 0.999 21 H 0.088 0.912 22 H 0.075 0.925 23 H 0.154 0.846 24 H 0.109 0.891 25 H 0.102 0.898 26 H 0.165 0.835 27 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.830 -9.062 -1.145 10.332 hybrid contribution -0.401 0.686 -0.037 0.795 sum 4.429 -8.376 -1.182 9.549 Atomic orbital electron populations 1.70107 1.07837 1.27638 1.51957 1.25979 0.95715 1.03336 0.94913 0.85477 0.78659 0.78599 0.78507 1.19668 1.20939 1.18791 1.21639 0.93402 0.92123 1.49956 0.92178 1.18915 0.93567 0.92614 0.94016 1.22281 0.97254 0.94375 0.97946 0.92243 1.22591 0.99355 0.91315 0.93899 1.62770 1.43721 1.08893 1.14692 1.23933 0.98950 0.95796 0.92611 1.23027 0.98613 0.94192 0.89095 0.91604 1.58561 1.22910 1.34157 1.21767 0.92895 0.99503 0.99883 0.91195 0.92512 0.84560 0.89084 0.89813 0.83519 0.83954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.94 13.29 21.45 0.28 -57.65 15 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 15 3 Si 0.96 44.88 29.54 68.60 2.03 46.91 15 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 15 6 H -0.26 -11.75 7.11 99.48 0.71 -11.05 15 7 C -0.53 -30.54 8.39 25.60 0.21 -30.33 15 8 H 0.06 3.30 7.68 -2.91 -0.02 3.28 15 9 C 0.05 2.48 4.18 29.85 0.12 2.60 15 10 C -0.10 -4.06 2.70 -9.91 -0.03 -4.09 15 11 H 0.06 2.53 7.95 -2.39 -0.02 2.51 15 12 C 0.06 2.19 6.79 86.45 0.59 2.78 15 13 N -0.67 -20.88 7.51 -502.17 -3.77 -24.65 15 14 C 0.02 0.50 7.22 86.65 0.63 1.13 15 15 C 0.06 2.14 3.75 46.12 0.17 2.31 15 16 H 0.07 2.43 7.86 -2.39 -0.02 2.41 15 17 N -0.84 -24.48 9.34 -163.69 -1.53 -26.01 15 18 H 0.26 15.28 8.31 -92.71 -0.77 14.51 15 19 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 15 20 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 15 21 H 0.07 2.51 8.14 -2.39 -0.02 2.49 15 22 H 0.06 2.38 7.35 -2.38 -0.02 2.37 15 23 H 0.34 10.00 8.92 -89.69 -0.80 9.20 15 24 H 0.09 1.99 8.14 -2.39 -0.02 1.97 15 25 H 0.08 2.07 8.12 -2.39 -0.02 2.05 15 26 H 0.35 7.98 9.08 -89.69 -0.81 7.16 15 27 H 0.35 8.97 8.87 -89.69 -0.80 8.17 15 Total: -1.00 -65.12 226.18 -2.06 -67.18 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -1.23 Total: 19.47 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 2.16 Total: -25.26 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -5.02 Total: -108.31 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -65.12 -2.06 -67.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260938071.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.737 kcal (2) G-P(sol) polarization free energy of solvation -65.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds